Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq843 123 4e-23 >seq843 Length=104768 Score = 123 bits (136), Expect = 4e-23 Identities = 363/554 (66%), Gaps = 4/554 (1%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||| ||| ||| || | || || ||||||||| | | ||| || | || | Sbjct 63472 ACTAACGGAAACTCCAACGGAATCGTTCCTATGCTCAGAGTTTTCAACAACACCGCCA-G 63530 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 ||| ||| || || || || || || || || ||| | ||| ||||| | || || || Sbjct 63531 ATATGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCTTTCGCCATCTACCTTGAGCCATG 63590 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||||| || ||||| || || |||| | || || ||| ||| || |||| || Sbjct 63591 GCACGCCGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCATGGAAAGGAGGAGGTTCG 63650 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 ||| | || | || || || |||||| | |||||| | ||||||||||| || | | Sbjct 63651 TGCCCGTGATCTCTTCTACGCTCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAA 63710 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 | | |||||| | |||||||| || || || ||| || ||||| || || Sbjct 63711 GAATCTCGACTGGACATTGATGTGCCCTAACGAGTGTCCTGGTTTGGCCGATGTCTACGG 63770 Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAG 97164 || ||||| || || ||| | |||||| |||||| | || ||| | Sbjct 63771 TGACGAGTTCGAAGCGTTGTATGAGAAATACGAGTCTGAGGGCAAGGGTCGCAAGA-GCA 63829 Query 97165 TCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGT 97224 || | || | | | || ||| | | ||| | |||||| ||||| |||| || | Sbjct 63830 TCAAAGCCCAAAAGCTTTGGTACTCTATCCTTGAGGCTCAAACTGAGACCGGAAACCCTT 63889 Query 97225 ACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCA 97284 ||| || ||||||||| | || || || ||||||||| | | || |||||| Sbjct 63890 TCATGCTTTACAAGGATGCTTGCAACCGAAAGAGCAACCAAAAGAATCTCGGTACCATCC 63949 Query 97285 AGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTT 97344 ||||||| ||||||| ||||| || |||||| | || || ||| || |||| Sbjct 63950 GAAGCTCCAACTTGTGCACTGAAATCGTCGAGTACTGTGCACCAGATGAGGTCGCTGTTT 64009 Query 97345 GCGTTCTGGCATCG 97358 || | |||||||| Sbjct 64010 GCAATTTGGCATCG 64023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741043322806640