Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq1406 93.3 4e-14
>seq1406
Length=252419
Score = 93.3 bits (102), Expect = 4e-14
Identities = 142/200 (71%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892
|||| ||| | ||||| |||||||| |||||||| |||| | || | |||||||
Sbjct 215086 ACCAAGTGTAGAGTAGATTCCTTTTGGATATTGTAGTCCGAAAGGGTGCGGCCGTCCTCA 215027
Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952
|| || || || ||| | ||||||||||| || || || | |||||| ||||| |
Sbjct 215026 AGTTGCTTCCCAGCAAAGATAAGTCTCTGTTGGTCAGGTGGGATGCCCTCCTTGTCTTGA 214967
Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGG-CTCCGTTTCGACGGTAATGGTTTT 19011
|| ||| || || | | ||| |||||| | ||| ||| |||| ||| ||||| ||
Sbjct 214966 ATCTTCGACTTGACGTTGTCGATAGTATC-CGAGGACTCAACCTCGAGGGTGATGGTCTT 214908
Query 19012 ACCTGTTAAAGTTTTGACAA 19031
|| || || || |||||||
Sbjct 214907 GCCGGTCAAGGTCTTGACAA 214888
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414564139833316
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |