Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq1406 93.3 4e-14 >seq1406 Length=252419 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||||| |||||||| |||||||| |||| | || | ||||||| Sbjct 215086 ACCAAGTGTAGAGTAGATTCCTTTTGGATATTGTAGTCCGAAAGGGTGCGGCCGTCCTCA 215027 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 || || || || ||| | ||||||||||| || || || | |||||| ||||| | Sbjct 215026 AGTTGCTTCCCAGCAAAGATAAGTCTCTGTTGGTCAGGTGGGATGCCCTCCTTGTCTTGA 214967 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGG-CTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | ||| |||||| | ||| ||| |||| ||| ||||| || Sbjct 214966 ATCTTCGACTTGACGTTGTCGATAGTATC-CGAGGACTCAACCTCGAGGGTGATGGTCTT 214908 Query 19012 ACCTGTTAAAGTTTTGACAA 19031 || || || || ||||||| Sbjct 214907 GCCGGTCAAGGTCTTGACAA 214888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414564139833316