Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq861 123 6e-23 seq1406 109 1e-18 seq908 93.3 1e-13 >seq861 Length=344942 Score = 123 bits (136), Expect = 6e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCC-TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 ||| || | ||| | |||| || ||||| | || || || ||||| || || ||||| | Sbjct 25581 TCCTCCACGTAGACGTAAG-ACGAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCCG 25523 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 | || || | |||||||| |||||||| || || || ||||| | ||||||||||| | Sbjct 25522 AGAGGGTGCGGCCGTCTTCGAGTTGTTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGG 25463 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510 | ||||| || || ||||| ||||| | ||| ||||| || | || || || | ||| | Sbjct 25462 GAATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTATCAATCGTGTCACTCGATTCGA 25403 Query 104511 CCTCTAGTGTAATAGTCTTACCAGT 104535 |||| || || |||||||| || || Sbjct 25402 CCTCGAGGGTGATAGTCTTGCCCGT 25378 >seq1406 Length=252419 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | ||| || || || || || || ||||| || | |||| || || Sbjct 215318 AAGGACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGGCCATC 215259 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || | ||| || || || ||||| || | |||||| ||||| || || || || ||||| Sbjct 215258 CTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATC 215199 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| | || ||||| || | ||||| || || ||||| || || || || Sbjct 215198 CTGAATCTTCGACTTCACATTGTCGATAGTATCTGAAGACTCAACCTCGAGAGTGATCGT 215139 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || || || || ||||| ||||| Sbjct 215138 CTTTCCGGTGAGGGTCTTGACGAATATTTGCAT 215106 Score = 96.9 bits (106), Expect = 8e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || ||||||||||| | ||||| || || || ||||| Sbjct 214791 GTGGACTCCTTCTGGATGTTGTAATCAGATAGAGTACGTCCGTCCTCGAGCTGCTTTCCG 214732 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | || ||||| || || ||||| || || ||||| ||||| | || Sbjct 214731 GCAAAGATCAAACGTTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTG 214672 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || || || | ||| ||| | || ||||| || || ||||||||||| || Sbjct 214671 ACGTTATCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTACCGGT 214619 Score = 93.3 bits (102), Expect = 1e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || || || || ||||| || || || | || || || | ||| || || || ||| Sbjct 215524 TCCTTTTGGATGTTATAATCGCTGAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAA 215465 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || | | ||||||||| || || || || || |||||||| ||||||| || ||||| Sbjct 215464 ATCAATCGCTGTTGATCTGGTGGGATACCCTCCTTATCCTGGATCTTTGACTTGACATTA 215405 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||| || || || || |||| |||||||||||| || || | || || || Sbjct 215404 TCAATGGTGTCCGAAGACTCAACTTCTAATGTAATAGTCTTGCCCGTCAAAGTCTTAACG 215345 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 215344 AAGATCTGCAT 215334 >seq908 Length=77775 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| || |||||||| || ||||| ||||| || ||||| ||| | ||||| ||| Sbjct 45154 GTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCCTCCATCTTCTGG 45213 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||||| | ||||| ||| | || | || ||||| ||||| |||| | | || Sbjct 45214 TTGAAGAAACGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGCTGATCTCCCGTGAT 45273 Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283 || ||| | ||| ||||||||| || Sbjct 45274 GAGGGTCTCCACACCGACTTCGCATG 45299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151373114571512