Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq861 123 6e-23
seq1406 109 1e-18
seq908 93.3 1e-13
>seq861
Length=344942
Score = 123 bits (136), Expect = 6e-23
Identities = 152/205 (74%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 104332 TCCCCCTCTTAGCC-TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390
||| || | ||| | |||| || ||||| | || || || ||||| || || ||||| |
Sbjct 25581 TCCTCCACGTAGACGTAAG-ACGAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCCG 25523
Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450
| || || | |||||||| |||||||| || || || ||||| | ||||||||||| |
Sbjct 25522 AGAGGGTGCGGCCGTCTTCGAGTTGTTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGG 25463
Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510
| ||||| || || ||||| ||||| | ||| ||||| || | || || || | ||| |
Sbjct 25462 GAATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTATCAATCGTGTCACTCGATTCGA 25403
Query 104511 CCTCTAGTGTAATAGTCTTACCAGT 104535
|||| || || |||||||| || ||
Sbjct 25402 CCTCGAGGGTGATAGTCTTGCCCGT 25378
>seq1406
Length=252419
Score = 109 bits (120), Expect = 1e-18
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || | ||| | ||| || || || || || || ||||| || | |||| || ||
Sbjct 215318 AAGGACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGGCCATC 215259
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| | ||| || || || ||||| || | |||||| ||||| || || || || |||||
Sbjct 215258 CTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATC 215199
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||||||||| | || ||||| || | ||||| || || ||||| || || || ||
Sbjct 215198 CTGAATCTTCGACTTCACATTGTCGATAGTATCTGAAGACTCAACCTCGAGAGTGATCGT 215139
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||| || || || || || || ||||| |||||
Sbjct 215138 CTTTCCGGTGAGGGTCTTGACGAATATTTGCAT 215106
Score = 96.9 bits (106), Expect = 8e-15
Identities = 125/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || || ||||||||||| | ||||| || || || |||||
Sbjct 214791 GTGGACTCCTTCTGGATGTTGTAATCAGATAGAGTACGTCCGTCCTCGAGCTGCTTTCCG 214732
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | | || ||||| || || ||||| || || ||||| ||||| | ||
Sbjct 214731 GCAAAGATCAAACGTTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTG 214672
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
|| || || | ||| ||| | || ||||| || || ||||||||||| ||
Sbjct 214671 ACGTTATCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTACCGGT 214619
Score = 93.3 bits (102), Expect = 1e-13
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428
|| || || || ||||| || || || | || || || | ||| || || || |||
Sbjct 215524 TCCTTTTGGATGTTATAATCGCTGAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAA 215465
Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488
|| | | ||||||||| || || || || || |||||||| ||||||| || |||||
Sbjct 215464 ATCAATCGCTGTTGATCTGGTGGGATACCCTCCTTATCCTGGATCTTTGACTTGACATTA 215405
Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548
|| | ||| || || || || |||| |||||||||||| || || | || || ||
Sbjct 215404 TCAATGGTGTCCGAAGACTCAACTTCTAATGTAATAGTCTTGCCCGTCAAAGTCTTAACG 215345
Query 104549 AATATCTGCAT 104559
|| ||||||||
Sbjct 215344 AAGATCTGCAT 215334
>seq908
Length=77775
Score = 93.3 bits (102), Expect = 1e-13
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197
||||| || |||||||| || ||||| ||||| || ||||| ||| | ||||| |||
Sbjct 45154 GTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCCTCCATCTTCTGG 45213
Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257
||||||||| | ||||| ||| | || | || ||||| ||||| |||| | | ||
Sbjct 45214 TTGAAGAAACGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGCTGATCTCCCGTGAT 45273
Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283
|| ||| | ||| ||||||||| ||
Sbjct 45274 GAGGGTCTCCACACCGACTTCGCATG 45299
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151373114571512
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |