Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1406 93.3 4e-14 >seq1406 Length=252419 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || |||||||||||| ||||||||| |||||||| || | ||| ||| | |||||| Sbjct 215314 ACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGGCCATCCTCC 215255 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 | ||||| || || |||| | ||||| || || || | || ||||| ||| | Sbjct 215254 AATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATCCTGA 215195 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || ||| ||| | | | || ||||| | |||||| ||||| || || || || Sbjct 215194 ATCTTCGACTTCACATTGTCGATAGTATCTGAAGACTCAACCTCGAGAGTGATCGTCTTT 215135 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| || || || || || ||||| Sbjct 215134 CCGGTGAGGGTCTTGACGAATATTTGCAT 215106 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| |||| | | ||| || || | |||||||||||||| ||||| ||||| || Sbjct 215560 CCTCCACGCAGGCGAAGCACCAAGTGCAAAGTGCTCTCCTTTTGGATGTTATAATC-GCT 215502 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | ||| || | ||||||| ||||| ||| || |||| || ||||| ||||| || Sbjct 215501 GAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGG 215442 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||||| ||| || || ||||| | | ||||| || | |||||| Sbjct 215441 GATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATGGTGTCCGAAGACTCAAC 215382 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | ||| || || || || || | ||| || || || |||||||| Sbjct 215381 TTCTAATGTAATAGTCTTGCCCGTCAAAGTCTTAACGAAGATCTGCAT 215334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421242400325714