Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1704 127 3e-25 seq880 113 7e-21 >seq1704 Length=184266 Score = 127 bits (140), Expect = 3e-25 Identities = 112/137 (82%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| |||||||||||||| |||||||||||||| || Sbjct 129269 GCCAAGCGTCACCGCAAGAT-TCTTCGTGATAACATCCAAGGTATCACCAAGCCAGCCAT 129327 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | ||||| || ||||||||||| ||||||||| |||| | || |||| ||||||| Sbjct 129328 CAGACGTCTCGCACGTCGTGGTGGTGTCAAGCGTATCTCAGCCATGATCTACGAAGAGAC 129387 Query 16552 TCGTGATGTTTTGAAGA 16568 || | |||| | |||| Sbjct 129388 CCGCGGTGTTCTCAAGA 129404 >seq880 Length=89697 Score = 113 bits (124), Expect = 7e-21 Identities = 86/99 (87%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| |||| ||||| || ||||||||||| ||||||||||| || || Sbjct 81307 GCCAAGCGTCACCGCAAGATC-CTTCGTGACAACATCCAAGGTATCACCAAGCCTGCGAT 81249 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||||||||| || ||||||||||| ||||||||| |||| Sbjct 81248 CCGTCGTCTCGCACGTCGTGGTGGTGTCAAGCGTATCTC 81210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073632877802