Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq843 304 2e-77
>seq843
Length=104768
Score = 304 bits (336), Expect = 2e-77
Identities = 1330/2067 (64%), Gaps = 53/2067 (3%)
Strand=Plus/Minus
Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054
|||||||||||||| || || || | | ||||| |||||||||||||| || || |||
Sbjct 64934 GTGAATTGAATGGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 64875
Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTAT 62113
|| || |||| || ||||||||||| || | || || | || || | ||
Sbjct 64874 CCCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTC-AT 64816
Query 62114 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62173
||||| ||||| |||||| |||||| ||||| || || | ||| |||||||| | |
Sbjct 64815 GTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGAC 64756
Query 62174 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62233
||| || ||| | || ||||||| || || |||| ||| ||||| | || |
Sbjct 64755 GATGGTACGTTGCGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCCGGGAT 64696
Query 62234 GTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62290
||||| | || || || ||||||||||| || || || | ||||| || | ||
Sbjct 64695 GTTTGGAACATTTTGGATTGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCGGA 64636
Query 62291 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62350
||| | | | ||| | | | | || || || || || ||||| ||||||||
Sbjct 64635 CCAAAGTCCCATATCGACGAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAATTCTCC 64576
Query 62351 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62410
|| | || | |||| ||| || || |||||| || || | |||| ||| |||
Sbjct 64575 AGCAAGGACACGTCGAGAGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTAAATCC 64516
Query 62411 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62470
| ||||||| || || || |||||||| || || | ||||| || | | |||
Sbjct 64515 AAGAATTTGACTGGTACTGGCTGTTGGCATAGGAGCGACGAGCAAACTGTTACGGATACC 64456
Query 62471 GTATGTTCTGATTTTATCTTTTAGAGGTT-CCCAATTCCAAAGATCCGACGGTACAACNN 62529
|| | ||| | | || | || | |||||| ||||||||| | ||| ||
Sbjct 64455 GTGTTGAGAGATCTGTTGCTTCA-AGCTAGCCCAATCCCAAAGATCGGTAGGTGTGACAC 64397
Query 62530 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATG 62589
||| || || ||| ||| ||| ||| ||| || || ||||
Sbjct 64396 CCCACATGTCATATTGGAGCTCGCCCTTAGAGGCAGGCGAGCCTTGATAAGTCTCATATG 64337
Query 62590 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGA 62649
| || | ||| || | || || || ||| ||| |||||||| ||||
Sbjct 64336 GACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAGCGTGGTAAATGGTCTCGA 64277
Query 62650 AGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATA 62708
| || | | || || | |||| || ||| || || || ||| | ||||| |
Sbjct 64276 AAATTTGGATGTTGAGGTGCTTG-GCCTCCGGGGATTCGAAAGGAAGACG-AAGAGCCAA 64219
Query 62709 -AACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 62767
|| || || || | ||||||||||| | | | |||||||| || | ||| | |
Sbjct 64218 GAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATT-GCTCT 64160
Query 62768 TTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAA 62826
||| || || |||| || || || || | ||| ||||| ||||| | || |||| |
Sbjct 64159 TTCTTGCCTCAGGAACCGGGTAGTAGTTGACATCGATAATCTTATTCAAGTTCTTGACGA 64100
Query 62827 TTACTTTGACCACATCCTTCAGTTTGAGAAAATCA-AATCGCCCATCTATT-ACAAACAT 62884
|||| | || || | || || | || ||| || | | ||| | | |||||
Sbjct 64099 CAACTTGGCAGACCTCGTGAAGCTTTTGGAAGTCATAAGTGGCGGTCTTCTCATCAACAT 64040
Query 62885 --GTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TAT 62939
||| || |||| ||||||| ||| ||||| || ||||||| | | | || ||
Sbjct 64039 AGGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGG-TGCACAGTAC 63981
Query 62940 TGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTC 62999
| | || |||||||| | || | ||| || || | ||| | ||| || |||
Sbjct 63980 TCGACGATTTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTGCTC 63921
Query 63000 TTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCT 63059
||| ||| || |||||||| ||||| ||||| || | || || ||| | |||| ||
Sbjct 63920 TTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCA 63861
Query 63060 ATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT--- 63116
| || | | ||| | | | || || || | ||| | |||| | ||
Sbjct 63860 AGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCTC---TTGCGAC-CCTTGCCCTCAGA 63805
Query 63117 -TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACA 63175
|||||| |||||| |||||||||||| || | |||| | |||| ||||||||
Sbjct 63804 CTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACCAGGACA 63745
Query 63176 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT---CACTCGTTTCATAAAGAG 63232
|| | || |||||||| | ||| | || || ||| || || ||||| |||||
Sbjct 63744 CTCGTTAGGGCACATCAATGTCCAGT---CGAGATTCTTTTCAACACGCTTCATGAAGAG 63688
Query 63233 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 63292
||| |||||||| ||||| || ||||| | || | | ||||| ||||| ||
Sbjct 63687 ATCTGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCATGGTT 63628
Query 63293 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63352
|||| || ||||||||| | | || ||| | ||||| || || | ||| ||||| |
Sbjct 63627 CTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAA 63568
Query 63353 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63412
| | ||||| || ||||| || || ||||| | ||||| |||||||| || |||||||
Sbjct 63567 AGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTGAAAACTCT 63508
Query 63413 CAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGC 63472
| ||| |||| || ||||| || | || || ||||||| |||||| || | ||
Sbjct 63507 GAGCATAGGAACGATTCCGTTGGAGTTTCCGTTAGTACCGGCGATATAAGCGCCGGTCGC 63448
Query 63473 ACGAATATTACTA--ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63530
||| || | | |||| ||||| || || || || | || || || | |||||
Sbjct 63447 ACGGATTCTGTGAACATTG--AGACCGATACCACCAGCATTCTTTGAAATCATGGCGCAA 63390
Query 63531 CGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAG 63590
||||||||||| || ||||| || ||||| || || |||||| | || || |||
Sbjct 63389 ATCTTTAACGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAG 63330
Query 63591 CTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63649
|| | || ||| | | || || || || | ||| || || ||||| || ||
Sbjct 63329 GATGAAAGTT-GTGCCTGTGGTGTGCCAGCTGCGAAGAGGGTTGGGGAGGCGTGGGTGAA 63271
Query 63650 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAA 63708
|||| || | | ||||| ||||| || || | || |||||| || | ||||
Sbjct 63270 GTATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACCG-TGAA 63212
Query 63709 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 63768
|||| || || |||||||| | ||| ||||| || | ||| ||||||| | |
Sbjct 63211 TTCCGACCGCAACACGCATAATCATATGCTGTGGACGTTCGCAGATCTTGCCATCGAGGC 63152
Query 63769 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCG 63826
| | || ||| || | || || ||||| || || | || ||||| || ||
Sbjct 63151 GGAGGAGATATGATCGCTCGAGGGTCTTGAAACCGAAGTATTGATAGTTGAAA--TCACG 63094
Query 63827 TTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATC-CATGGTGA 63885
||||| | || | |||||||| | ||| | || |||| ||| ||| |
Sbjct 63093 GTCGTAGACGATGGCGGAGTTGAGCTCGGCCTCGTGCTTCATAACACAATCGTATGTT-- 63036
Query 63886 TACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCC 63944
| ||| || || || || | || ||| |||||| ||||||| | |||| ||
Sbjct 63035 TGTTTGCTGATCATGGGTGACAATCTCTTGTTTCGAGGATTGACATAGTGGTATAATTCG 62976
Query 63945 TCCATCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCT 64003
|| || | | | ||| | || || |||| |||||| || || || || || |||||
Sbjct 62975 GAGATGAC-GCTCGAGAATTGCTTCTTGGTTTGCTTGTGGAGGTTCGAAACTGCAATTCT 62917
Query 64004 GGCGGCTAGAATGGCATAATCCGGATG 64030
|| || || ||||||||||| |||||
Sbjct 62916 TGCTGCGAGGATGGCATAATCGGGATG 62890
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622933853356240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |