Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq843 304 2e-77 >seq843 Length=104768 Score = 304 bits (336), Expect = 2e-77 Identities = 1330/2067 (64%), Gaps = 53/2067 (3%) Strand=Plus/Minus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 |||||||||||||| || || || | | ||||| |||||||||||||| || || ||| Sbjct 64934 GTGAATTGAATGGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 64875 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTAT 62113 || || |||| || ||||||||||| || | || || | || || | || Sbjct 64874 CCCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTC-AT 64816 Query 62114 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62173 ||||| ||||| |||||| |||||| ||||| || || | ||| |||||||| | | Sbjct 64815 GTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGAC 64756 Query 62174 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62233 ||| || ||| | || ||||||| || || |||| ||| ||||| | || | Sbjct 64755 GATGGTACGTTGCGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCCGGGAT 64696 Query 62234 GTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62290 ||||| | || || || ||||||||||| || || || | ||||| || | || Sbjct 64695 GTTTGGAACATTTTGGATTGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCGGA 64636 Query 62291 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62350 ||| | | | ||| | | | | || || || || || ||||| |||||||| Sbjct 64635 CCAAAGTCCCATATCGACGAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAATTCTCC 64576 Query 62351 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62410 || | || | |||| ||| || || |||||| || || | |||| ||| ||| Sbjct 64575 AGCAAGGACACGTCGAGAGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTAAATCC 64516 Query 62411 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62470 | ||||||| || || || |||||||| || || | ||||| || | | ||| Sbjct 64515 AAGAATTTGACTGGTACTGGCTGTTGGCATAGGAGCGACGAGCAAACTGTTACGGATACC 64456 Query 62471 GTATGTTCTGATTTTATCTTTTAGAGGTT-CCCAATTCCAAAGATCCGACGGTACAACNN 62529 || | ||| | | || | || | |||||| ||||||||| | ||| || Sbjct 64455 GTGTTGAGAGATCTGTTGCTTCA-AGCTAGCCCAATCCCAAAGATCGGTAGGTGTGACAC 64397 Query 62530 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATG 62589 ||| || || ||| ||| ||| ||| ||| || || |||| Sbjct 64396 CCCACATGTCATATTGGAGCTCGCCCTTAGAGGCAGGCGAGCCTTGATAAGTCTCATATG 64337 Query 62590 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGA 62649 | || | ||| || | || || || ||| ||| |||||||| |||| Sbjct 64336 GACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAGCGTGGTAAATGGTCTCGA 64277 Query 62650 AGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATA 62708 | || | | || || | |||| || ||| || || || ||| | ||||| | Sbjct 64276 AAATTTGGATGTTGAGGTGCTTG-GCCTCCGGGGATTCGAAAGGAAGACG-AAGAGCCAA 64219 Query 62709 -AACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 62767 || || || || | ||||||||||| | | | |||||||| || | ||| | | Sbjct 64218 GAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATT-GCTCT 64160 Query 62768 TTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAA 62826 ||| || || |||| || || || || | ||| ||||| ||||| | || |||| | Sbjct 64159 TTCTTGCCTCAGGAACCGGGTAGTAGTTGACATCGATAATCTTATTCAAGTTCTTGACGA 64100 Query 62827 TTACTTTGACCACATCCTTCAGTTTGAGAAAATCA-AATCGCCCATCTATT-ACAAACAT 62884 |||| | || || | || || | || ||| || | | ||| | | ||||| Sbjct 64099 CAACTTGGCAGACCTCGTGAAGCTTTTGGAAGTCATAAGTGGCGGTCTTCTCATCAACAT 64040 Query 62885 --GTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TAT 62939 ||| || |||| ||||||| ||| ||||| || ||||||| | | | || || Sbjct 64039 AGGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGG-TGCACAGTAC 63981 Query 62940 TGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTC 62999 | | || |||||||| | || | ||| || || | ||| | ||| || ||| Sbjct 63980 TCGACGATTTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTGCTC 63921 Query 63000 TTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCT 63059 ||| ||| || |||||||| ||||| ||||| || | || || ||| | |||| || Sbjct 63920 TTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCA 63861 Query 63060 ATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT--- 63116 | || | | ||| | | | || || || | ||| | |||| | || Sbjct 63860 AGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCTC---TTGCGAC-CCTTGCCCTCAGA 63805 Query 63117 -TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACA 63175 |||||| |||||| |||||||||||| || | |||| | |||| |||||||| Sbjct 63804 CTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACCAGGACA 63745 Query 63176 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT---CACTCGTTTCATAAAGAG 63232 || | || |||||||| | ||| | || || ||| || || ||||| ||||| Sbjct 63744 CTCGTTAGGGCACATCAATGTCCAGT---CGAGATTCTTTTCAACACGCTTCATGAAGAG 63688 Query 63233 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 63292 ||| |||||||| ||||| || ||||| | || | | ||||| ||||| || Sbjct 63687 ATCTGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCATGGTT 63628 Query 63293 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63352 |||| || ||||||||| | | || ||| | ||||| || || | ||| ||||| | Sbjct 63627 CTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAA 63568 Query 63353 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63412 | | ||||| || ||||| || || ||||| | ||||| |||||||| || ||||||| Sbjct 63567 AGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTGAAAACTCT 63508 Query 63413 CAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGC 63472 | ||| |||| || ||||| || | || || ||||||| |||||| || | || Sbjct 63507 GAGCATAGGAACGATTCCGTTGGAGTTTCCGTTAGTACCGGCGATATAAGCGCCGGTCGC 63448 Query 63473 ACGAATATTACTA--ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63530 ||| || | | |||| ||||| || || || || | || || || | ||||| Sbjct 63447 ACGGATTCTGTGAACATTG--AGACCGATACCACCAGCATTCTTTGAAATCATGGCGCAA 63390 Query 63531 CGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAG 63590 ||||||||||| || ||||| || ||||| || || |||||| | || || ||| Sbjct 63389 ATCTTTAACGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAG 63330 Query 63591 CTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63649 || | || ||| | | || || || || | ||| || || ||||| || || Sbjct 63329 GATGAAAGTT-GTGCCTGTGGTGTGCCAGCTGCGAAGAGGGTTGGGGAGGCGTGGGTGAA 63271 Query 63650 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAA 63708 |||| || | | ||||| ||||| || || | || |||||| || | |||| Sbjct 63270 GTATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACCG-TGAA 63212 Query 63709 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 63768 |||| || || |||||||| | ||| ||||| || | ||| ||||||| | | Sbjct 63211 TTCCGACCGCAACACGCATAATCATATGCTGTGGACGTTCGCAGATCTTGCCATCGAGGC 63152 Query 63769 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCG 63826 | | || ||| || | || || ||||| || || | || ||||| || || Sbjct 63151 GGAGGAGATATGATCGCTCGAGGGTCTTGAAACCGAAGTATTGATAGTTGAAA--TCACG 63094 Query 63827 TTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATC-CATGGTGA 63885 ||||| | || | |||||||| | ||| | || |||| ||| ||| | Sbjct 63093 GTCGTAGACGATGGCGGAGTTGAGCTCGGCCTCGTGCTTCATAACACAATCGTATGTT-- 63036 Query 63886 TACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCC 63944 | ||| || || || || | || ||| |||||| ||||||| | |||| || Sbjct 63035 TGTTTGCTGATCATGGGTGACAATCTCTTGTTTCGAGGATTGACATAGTGGTATAATTCG 62976 Query 63945 TCCATCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCT 64003 || || | | | ||| | || || |||| |||||| || || || || || ||||| Sbjct 62975 GAGATGAC-GCTCGAGAATTGCTTCTTGGTTTGCTTGTGGAGGTTCGAAACTGCAATTCT 62917 Query 64004 GGCGGCTAGAATGGCATAATCCGGATG 64030 || || || ||||||||||| ||||| Sbjct 62916 TGCTGCGAGGATGGCATAATCGGGATG 62890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622933853356240