Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq843 203 8e-47 seq908 84.2 6e-11 >seq843 Length=104768 Score = 203 bits (224), Expect = 8e-47 Identities = 1043/1640 (64%), Gaps = 54/1640 (3%) Strand=Plus/Plus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 ||||| || ||||||||| | ||||||||||| | || || || | |||| | || Sbjct 63172 GAACGTCCACAGCATATGATTATGCGTGTTGCGGTCGGAATTCACGGTGAGGATATCGAG 63231 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCT-CGTGTA-TTCACGCACGCCACGCCAA 363565 || || || || || || || ||| | || | | || ||||| |||||| | |||| Sbjct 63232 GCTGCCATCGAGACCTACAA-CTTG-ATGTCCAGCAAATACTTCACCCACGCCTCCCCAA 63289 Query 363566 CAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGA 363625 | | | | ||||| || | | |||| | || || ||||| ||| | | |||| Sbjct 63290 CCCTCTTCGCAGCTGGCACACCACAGGCACAACTTTCATCCTGCTTCCTTATCGACATGA 63349 Query 363626 AGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGA 363685 |||| || ||| || ||||| | ||||| | |||| ||| || | ||||| |||| Sbjct 63350 AGGAGGACAGCATTGATGGTATTTACGACACGTTAAAGATTTGCGCCATGATTTCAAAGA 63409 Query 363686 ATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGC 363744 |||| || || || ||| | | |||| | ||||| || | | ||| || | Sbjct 63410 ATGCTGGTGGTATCGGTCTCAATGTTCACAGAATCCGTGCGACCGG-CGCTTATATCGCC 63468 Query 363745 GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCG 363804 || || ||| |||| || || | ||||| ||||| | || || |||| || || Sbjct 63469 GGTACTAACGGAAACTCCAACGGAATCGTTCCTATGCTCAGAGTTTTCAACAACACCGCC 63528 Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864 || || || || || ||||| ||||| || || || || || || || ||||| Sbjct 63529 AGATATGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCTTTCGCCATCTACCTTGAGCCA 63588 Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTG 363924 || |||||| |||| ||||| || || ||||| || ||| ||||| ||||| | Sbjct 63589 TGGCACGCCGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCATGGAAAGGAGGAGGTT 63648 Query 363925 CGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984 ||||| |||||||| ||||| || || ||| || | || | || |||||||| || || Sbjct 63649 CGTGCCCGTGATCTCTTCTACGCTCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAA 63708 Query 363985 GCAGGTAAGAAT------TGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGAT 364038 |||||| ||| || | | ||||| |||| ||||| ||| | ||||| Sbjct 63709 ------AAGAATCTCGACTGGACATTGATGTGCCCTAACGAGTGTCCTGGTTTGGCCGAT 63762 Query 364039 GTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGT 364098 || | |||||||| | | || | || || || || || || ||||| |||| ||| Sbjct 63763 GTCTACGGTGACGAGTTCGAAGCGTTGTATGAGAAATACGAGTCTGAGGGCAAGGGTCGC 63822 Query 364099 AAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGA 364158 |||| || || || ||||| |||| | ||| | || | || | |||||| ||| Sbjct 63823 AAGAGCATCAAAGCCCAAAAGCTTTGGTACTCTATCCTTGAGGCTCAAACTGAGACCGGA 63882 Query 364159 ACACCCTAT-ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGG 364217 | ||||| | ||| | ||||| ||| | |||||||| ||| |||||| || | || || Sbjct 63883 A-ACCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGCAACCAAAAGAATCTCGG 63941 Query 364218 TACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGA 364276 ||| || | | || | ||| | || || || || | || ||| || || || ||| Sbjct 63942 TACCATCC-GAAGCTCCAACTTGTGCACTGAAATCGTCGAGTACTGTGCACCAGATGAGG 64000 Query 364277 CTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT-----AAAAGATGGT-A 364330 || || || || | || ||| | || || || | | ||| | |||| | | Sbjct 64001 TCGCTGTTTGCAATTTGGCATCGCTTGCTCTCCCAACCTATGTTGATGAGAAGACCGCCA 64060 Query 364331 CTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAAT--CTCGAC-A 364387 ||| |||| ||| | ||| | || || || || | | ||| || || | Sbjct 64061 CTTATGACTTCCAAAAGCTTCACGAGGT---CTGCCAAGTTGTCGTCAAGAACTTGAATA 64117 Query 364388 AGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCC-GAGCGTTCTAATATGCGTCAT 364446 || ||||||| || || || || ||||||| || || | | ||| | ||||| Sbjct 64118 AGATTATCGATGTCAACTACTACCCGGTTCCTGAGGCAAGAAAGAGC-AATTTCCGTCAC 64176 Query 364447 CGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCA 364506 | || |||| ||| ||||| || || || ||||| | || || || | | Sbjct 64177 AGACCTATTGCTCTCGGTGTTCAAGGTCTTGCTGATGCCTTCTTGGCTCTTCGTCTTCCT 64236 Query 364507 TTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCC 364566 || || || || || || || || | | || || || || || || || Sbjct 64237 TTCGAATCCCCGGAGGCCAAGCACCTCAACATCCAAATTTTCGAGACCATTTACCACGCT 64296 Query 364567 GCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGG 364626 || |||||||||| || |||||||| | | || || |||||| | || Sbjct 64297 GCTTTGACTGCTTCCATGGAGTTGGCAAAGATTCATGGTCCATATGAGACTTATCAAGGC 64356 Query 364627 TCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGA 364686 || ||| || |||| | |||| | ||| | ||| |||||| || | | | Sbjct 64357 TCGCCTGCCTCTAAGGGCGAGCTCCAATATGACATGTGGGGTGTCACACCTACCGATCTT 64416 Query 364687 TGGAACTGGGATACGCTACGTTCCAACGTTAAGA------AGCATGGTACTCGCAAC--- 364737 ||| | |||| || ||| | |||| ||| | || |||| || ||| Sbjct 64417 TGGGATTGGGCTA-GCTT-GAAGCAAC----AGATCTCTCAACACGGTATCCGTAACAGT 64470 Query 364738 TCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAG 364797 | ||||| || || ||||| || || ||| || || || ||| |||||| Sbjct 64471 TTGCTCGTC---GCTCCTATGCCAACAGCCAGTACCAGTCAAATTCTTGGATTTAACGAG 64527 Query 364798 TGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCG 364857 |||||||| || | ||| ||| | || || || || || ||| | |||||||| | Sbjct 64528 TGCTTCGAGCCATATACCTCCAACATCTACTCTCGACGTGTCCTTGCTGGAGAATTCCAA 64587 Query 364858 GTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATG 364917 || || || | || |||||||||| ||| || || ||| |||| |||| Sbjct 64588 GTTGTCAACCCATGGCTTCTCAAGGATCTCGTCGATATGGGACTTTGGTCCGACAACATG 64647 Query 364918 AAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGAT 364977 |||||| |||||| || | | ||| || | || || ||||| | || | ||| Sbjct 64648 AAGAACCGTATCATTGCTGATGGTGGATCAATCCAAAATGTTCCAAACATCCCGGCTGAT 64707 Query 364978 CTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCG 365037 | ||| || ||||||| ||||| ||||| || || || || || | | ||||| Sbjct 64708 ATCAAGGCTCTTTACAAGACCGTTTGGGAGATCTCGCAACGTACCATCGTCCAGATGGCT 64767 Query 365038 GCCGATCGCGGTGCTTTTAT 365057 ||||| || ||||| || || Sbjct 64768 GCCGACCGTGGTGCATTCAT 64787 >seq908 Length=77775 Score = 84.2 bits (92), Expect = 6e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 22791 ATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAA 22850 ||| ||| | || || || |||||||| | |||| ||||| ||| ||| ||| || Sbjct 45444 ATACATTGAGTTCGTCGCTGATCGTCTCCTCCTTTCCCTCGGCAATGAGAAGGTTTACAA 45503 Query 22851 CGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTT 22910 || | || ||||| || | ||||| || || |||| ||||||||||| ||||| Sbjct 45504 GGTTGCCAACCCATTCGACTTTATGGAGAACATCTCCCTTGCCGGAAAGACCAACTTCTT 45563 Query 22911 CGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGGATG 22954 ||| || | |||| ||| |||||||| || || || |||| || Sbjct 45564 CGAGAAGCGTGTTGCTGATTACCAAAAGGCCGGCGTCATGGCTG 45607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303324977540348