Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq1379 140 2e-28
seq1406 109 4e-19
>seq1379
Length=12095
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1107 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1166
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 1167 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1201
>seq1406
Length=252419
Score = 109 bits (120), Expect = 4e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167
|||||| || | ||||||||||||||| || || ||||| | ||| | || ||
Sbjct 215543 CACCAAGTGCAAAGTGCTCTCCTTTTGGATGTTATAATCGCTGAGTGTACGGCCATCCTC 215484
Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227
||||| || ||||| || || | || |||||||| | |||| || || || |||
Sbjct 215483 CAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGGGATACCCTCCTTATCCTG 215424
Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287
|| ||| ||| ||||| | | || || | |||||||||||||||||||| ||
Sbjct 215423 GATCTTTGACTTGACATTATCAATGGTGTCCGAAGACTCAACTTCTAATGTAATAGTCTT 215364
Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||||||| || || ||||| ||||||||
Sbjct 215363 GCCCGTCAAAGTCTTAACGAAGATCTGCAT 215334
Score = 107 bits (118), Expect = 1e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | | ||| | ||||||||||| ||| ||||||||| || ||||| || |
Sbjct 215334 TACCACCACGAAGACGAAGGACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGG 215275
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
|||| || | || || ||||| || || || || || || || ||||| || | |
Sbjct 215274 ACAAGGTTCGGCCATCCTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTG 215215
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| || || || ||| ||| || ||||||||| | || ||||||| | ||||
Sbjct 215214 GGATACCCTCCTTATCCTGAATCTTCGACTTCACATTGTCGATAGTATCTGAAGACTCAA 215155
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || | || || || || || || | ||| || |||||||| |||||
Sbjct 215154 CCTCGAGAGTGATCGTCTTTCCGGTGAGGGTCTTGACGAATATTTGCAT 215106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334940203162334
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |