Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq843 275 8e-69 >seq843 Length=104768 Score = 275 bits (304), Expect = 8e-69 Identities = 1151/1789 (64%), Gaps = 41/1789 (2%) Strand=Plus/Minus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 |||||||||||||| || || || | | ||||| |||||||||||||| || || ||| Sbjct 64934 GTGAATTGAATGGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 64875 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTAT 61968 || || |||| || ||||||||||| || | || || | || || | || Sbjct 64874 CCCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTC-AT 64816 Query 61969 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62028 ||||| ||||| |||||| |||||| ||||| || || | ||| |||||||| | | Sbjct 64815 GTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGAC 64756 Query 62029 AATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62088 || || ||| | || ||||||| || || |||| ||| ||||| | || | Sbjct 64755 GATGGTACGTTGCGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCCGGGAT 64696 Query 62089 GTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62145 ||||| | || || || ||||||||||| || || || | ||||| || | || Sbjct 64695 GTTTGGAACATTTTGGATTGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCGGA 64636 Query 62146 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62205 ||| | | | ||| | | | | || || || || || ||||| |||||||| Sbjct 64635 CCAAAGTCCCATATCGACGAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAATTCTCC 64576 Query 62206 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 62265 || | || | |||| ||| || || |||||| || || | |||| ||| ||| Sbjct 64575 AGCAAGGACACGTCGAGAGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTAAATCC 64516 Query 62266 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62325 | ||||||| || || || |||||||| || || | ||||| || | | ||| Sbjct 64515 AAGAATTTGACTGGTACTGGCTGTTGGCATAGGAGCGACGAGCAAACTGTTACGGATACC 64456 Query 62326 GTATGTTCTGATTTTATCTTTTAGAGGTT-CCCAATTCCAAAGATCCGACGGTACAACNN 62384 || | ||| | | || | || | |||||| ||||||||| | ||| || Sbjct 64455 GTGTTGAGAGATCTGTTGCTTCA-AGCTAGCCCAATCCCAAAGATCGGTAGGTGTGACAC 64397 Query 62385 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATG 62444 ||| || || ||| ||| ||| ||| ||| || || |||| Sbjct 64396 CCCACATGTCATATTGGAGCTCGCCCTTAGAGGCAGGCGAGCCTTGATAAGTCTCATATG 64337 Query 62445 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGA 62504 | || | ||| || | || || || ||| ||| |||||||| |||| Sbjct 64336 GACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAGCGTGGTAAATGGTCTCGA 64277 Query 62505 AGATCTTCTTATTTAGAT-CTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATA 62563 | || | | || || | |||| || ||| || || || ||| | ||||| | Sbjct 64276 AAATTTGGATGTTGAGGTGCTTG-GCCTCCGGGGATTCGAAAGGAAGACG-AAGAGCCAA 64219 Query 62564 -AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 62622 || || || || | ||||||||||| | | | |||||||| || | ||| | | Sbjct 64218 GAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATT-GCTCT 64160 Query 62623 TTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAA 62681 ||| || || |||| || || || || | ||| ||||| ||||| | || |||| | Sbjct 64159 TTCTTGCCTCAGGAACCGGGTAGTAGTTGACATCGATAATCTTATTCAAGTTCTTGACGA 64100 Query 62682 TTACTTTGACCACATCCTTCAGTTTGAGAAAATCA-AATCGCCCATCTATT-ACAAACAT 62739 |||| | || || | || || | || ||| || | | ||| | | ||||| Sbjct 64099 CAACTTGGCAGACCTCGTGAAGCTTTTGGAAGTCATAAGTGGCGGTCTTCTCATCAACAT 64040 Query 62740 --GTTC--AATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TAT 62794 ||| | |||| ||||||| ||| ||||| || ||||||| | | | || || Sbjct 64039 AGGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGG-TGCACAGTAC 63981 Query 62795 TGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTC 62854 | | || |||||||| | || | |||||| || | ||| | ||| || ||| Sbjct 63980 TCGACGATTTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTGCTC 63921 Query 62855 TTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCT 62914 ||| ||| || |||||||| ||||| ||||| || | || || ||| | |||| || Sbjct 63920 TTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCA 63861 Query 62915 ATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTC-TCTT-- 62971 | || | | ||| | | | || || || | ||| | ||| | || Sbjct 63860 AGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCTC---TTGCGACCCTTGCCCTCAGAC 63804 Query 62972 TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACAT 63031 |||||| |||||| |||||||||||| || | |||| | ||| |||||||| Sbjct 63803 TCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACCAGGACAC 63744 Query 63032 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTT---CACTCGTTTCATAAAGAGA 63088 || | || |||||||| | ||| | || || ||| || || ||||| |||||| Sbjct 63743 TCGTTAGGGCACATCAATGTCCAGT---CGAGATTCTTTTCAACACGCTTCATGAAGAGA 63687 Query 63089 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 63148 || |||||||| ||||| || ||||| | || | | ||||| ||||| ||| Sbjct 63686 TCTGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCATGGTTC 63627 Query 63149 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63208 ||| || ||||||||| | | || ||| | ||||| || || | ||| ||||| | | Sbjct 63626 TTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAA 63567 Query 63209 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63268 | ||||| || ||||| || || ||||| | ||||| |||||||| || ||||||| Sbjct 63566 GCACCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTGAAAACTCTG 63507 Query 63269 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCA 63328 | ||| |||| || || ||||| | || || || || | |||||| || | ||| Sbjct 63506 AGCATAGGAACGATTCCGTTGGAGTTTCCGTTAGTACCGGCGATATAAGCGCCGGTCGCA 63447 Query 63329 CGAATATTACTA--ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63386 || || | | |||| ||||| || || || || | || || || | ||||| Sbjct 63446 CGGATTCTGTGAACATTG--AGACCGATACCACCAGCATTCTTTGAAATCATGGCGCAAA 63389 Query 63387 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 63446 |||||||| || || || || || || || || ||| |||||| | || || ||| Sbjct 63388 TCTTTAACGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGG 63329 Query 63447 TAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 || | || ||| | | || || || || | ||| || || ||||| || || Sbjct 63328 ATGAAAGTT-GTGCCTGTGGTGTGCCAGCTGCGAAGAGGGTTGGGGAGGCGTGGGTGAAG 63270 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAAT 63564 |||| || | | ||||| ||||| || || | || |||||| || | ||||| Sbjct 63269 TATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACCG-TGAAT 63211 Query 63565 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 63613 ||| || || |||||||| | ||| ||||| || | ||| ||||||| Sbjct 63210 TCCGACCGCAACACGCATAATCATATGCTGTGGACGTTCGCAGATCTTG 63162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633618424434400