Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq843 275 8e-69
>seq843
Length=104768
Score = 275 bits (304), Expect = 8e-69
Identities = 1151/1789 (64%), Gaps = 41/1789 (2%)
Strand=Plus/Minus
Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909
|||||||||||||| || || || | | ||||| |||||||||||||| || || |||
Sbjct 64934 GTGAATTGAATGGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 64875
Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTAT 61968
|| || |||| || ||||||||||| || | || || | || || | ||
Sbjct 64874 CCCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTC-AT 64816
Query 61969 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62028
||||| ||||| |||||| |||||| ||||| || || | ||| |||||||| | |
Sbjct 64815 GTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGAC 64756
Query 62029 AATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62088
|| || ||| | || ||||||| || || |||| ||| ||||| | || |
Sbjct 64755 GATGGTACGTTGCGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCCGGGAT 64696
Query 62089 GTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62145
||||| | || || || ||||||||||| || || || | ||||| || | ||
Sbjct 64695 GTTTGGAACATTTTGGATTGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCGGA 64636
Query 62146 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62205
||| | | | ||| | | | | || || || || || ||||| ||||||||
Sbjct 64635 CCAAAGTCCCATATCGACGAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAATTCTCC 64576
Query 62206 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 62265
|| | || | |||| ||| || || |||||| || || | |||| ||| |||
Sbjct 64575 AGCAAGGACACGTCGAGAGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTAAATCC 64516
Query 62266 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62325
| ||||||| || || || |||||||| || || | ||||| || | | |||
Sbjct 64515 AAGAATTTGACTGGTACTGGCTGTTGGCATAGGAGCGACGAGCAAACTGTTACGGATACC 64456
Query 62326 GTATGTTCTGATTTTATCTTTTAGAGGTT-CCCAATTCCAAAGATCCGACGGTACAACNN 62384
|| | ||| | | || | || | |||||| ||||||||| | ||| ||
Sbjct 64455 GTGTTGAGAGATCTGTTGCTTCA-AGCTAGCCCAATCCCAAAGATCGGTAGGTGTGACAC 64397
Query 62385 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATG 62444
||| || || ||| ||| ||| ||| ||| || || ||||
Sbjct 64396 CCCACATGTCATATTGGAGCTCGCCCTTAGAGGCAGGCGAGCCTTGATAAGTCTCATATG 64337
Query 62445 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGA 62504
| || | ||| || | || || || ||| ||| |||||||| ||||
Sbjct 64336 GACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAGCGTGGTAAATGGTCTCGA 64277
Query 62505 AGATCTTCTTATTTAGAT-CTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATA 62563
| || | | || || | |||| || ||| || || || ||| | ||||| |
Sbjct 64276 AAATTTGGATGTTGAGGTGCTTG-GCCTCCGGGGATTCGAAAGGAAGACG-AAGAGCCAA 64219
Query 62564 -AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 62622
|| || || || | ||||||||||| | | | |||||||| || | ||| | |
Sbjct 64218 GAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATT-GCTCT 64160
Query 62623 TTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAA 62681
||| || || |||| || || || || | ||| ||||| ||||| | || |||| |
Sbjct 64159 TTCTTGCCTCAGGAACCGGGTAGTAGTTGACATCGATAATCTTATTCAAGTTCTTGACGA 64100
Query 62682 TTACTTTGACCACATCCTTCAGTTTGAGAAAATCA-AATCGCCCATCTATT-ACAAACAT 62739
|||| | || || | || || | || ||| || | | ||| | | |||||
Sbjct 64099 CAACTTGGCAGACCTCGTGAAGCTTTTGGAAGTCATAAGTGGCGGTCTTCTCATCAACAT 64040
Query 62740 --GTTC--AATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TAT 62794
||| | |||| ||||||| ||| ||||| || ||||||| | | | || ||
Sbjct 64039 AGGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGG-TGCACAGTAC 63981
Query 62795 TGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTC 62854
| | || |||||||| | || | |||||| || | ||| | ||| || |||
Sbjct 63980 TCGACGATTTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTGCTC 63921
Query 62855 TTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCT 62914
||| ||| || |||||||| ||||| ||||| || | || || ||| | |||| ||
Sbjct 63920 TTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCA 63861
Query 62915 ATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTC-TCTT-- 62971
| || | | ||| | | | || || || | ||| | ||| | ||
Sbjct 63860 AGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCTC---TTGCGACCCTTGCCCTCAGAC 63804
Query 62972 TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACAT 63031
|||||| |||||| |||||||||||| || | |||| | ||| ||||||||
Sbjct 63803 TCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACCAGGACAC 63744
Query 63032 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTT---CACTCGTTTCATAAAGAGA 63088
|| | || |||||||| | ||| | || || ||| || || ||||| ||||||
Sbjct 63743 TCGTTAGGGCACATCAATGTCCAGT---CGAGATTCTTTTCAACACGCTTCATGAAGAGA 63687
Query 63089 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 63148
|| |||||||| ||||| || ||||| | || | | ||||| ||||| |||
Sbjct 63686 TCTGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCATGGTTC 63627
Query 63149 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63208
||| || ||||||||| | | || ||| | ||||| || || | ||| ||||| | |
Sbjct 63626 TTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAA 63567
Query 63209 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63268
| ||||| || ||||| || || ||||| | ||||| |||||||| || |||||||
Sbjct 63566 GCACCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTGAAAACTCTG 63507
Query 63269 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCA 63328
| ||| |||| || || ||||| | || || || || | |||||| || | |||
Sbjct 63506 AGCATAGGAACGATTCCGTTGGAGTTTCCGTTAGTACCGGCGATATAAGCGCCGGTCGCA 63447
Query 63329 CGAATATTACTA--ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63386
|| || | | |||| ||||| || || || || | || || || | |||||
Sbjct 63446 CGGATTCTGTGAACATTG--AGACCGATACCACCAGCATTCTTTGAAATCATGGCGCAAA 63389
Query 63387 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 63446
|||||||| || || || || || || || || ||| |||||| | || || |||
Sbjct 63388 TCTTTAACGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGG 63329
Query 63447 TAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505
|| | || ||| | | || || || || | ||| || || ||||| || ||
Sbjct 63328 ATGAAAGTT-GTGCCTGTGGTGTGCCAGCTGCGAAGAGGGTTGGGGAGGCGTGGGTGAAG 63270
Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAAT 63564
|||| || | | ||||| ||||| || || | || |||||| || | |||||
Sbjct 63269 TATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACCG-TGAAT 63211
Query 63565 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 63613
||| || || |||||||| | ||| ||||| || | ||| |||||||
Sbjct 63210 TCCGACCGCAACACGCATAATCATATGCTGTGGACGTTCGCAGATCTTG 63162
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633618424434400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |