Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1406 125 6e-24 >seq1406 Length=252419 Score = 125 bits (138), Expect = 6e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || ||||| | ||||| || | ||||| |||| || ||||| || Sbjct 215106 ATGCAAATATTCGTCAAGACCCTCACCGGAAAGACGATCACTCTCGAGGTTGAGTCTTCA 215165 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || |||||||| ||||| | || | ||| || || || || || ||||||||||| Sbjct 215166 GATACTATCGACAATGTGAAGTCGAAGATTCA-GGATAAGGAGGGTATCCCACCTGACCA 215224 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | ||||| || ||||| ||||| || |||| || || || ||| ||||| Sbjct 215225 ACAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTCCGACTACAA 215284 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || ||||| || ||||| || || Sbjct 215285 CATCCAAAAGGAGTCCACACTTCATTTGGTCCT 215317 Score = 111 bits (122), Expect = 1e-19 Identities = 148/203 (73%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 25009 TTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCG 25068 |||| ||||| |||||||| || ||||||| |||| || ||||| || || ||||||| Sbjct 214888 TTGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGATACTATCG 214947 Query 25069 AGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATT 25127 | | ||| | || | ||| ||||| || || || ||||||||||||||| | || Sbjct 214948 ACAACGTCAAGTCGAAGATTCAA-GACAAGGAGGGCATCCCACCTGACCAACAGAGACTT 215006 Query 25128 ATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAA 25187 || ||||| || || ||| | || || | ||||| | || |||||||| ||||| Sbjct 215007 ATCTTTGCTGGGAAGCAACTTGAGGACGGCCGCACCCTTTCGGACTACAATATCCAAAAG 215066 Query 25188 GAATCCACGCTACATTTAGTGCT 25210 ||||| || ||||| || || || Sbjct 215067 GAATCTACTCTACACTTGGTTCT 215089 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || | || ||| | ||||| ||||| || Sbjct 215334 ATGCAGATCTTCGTTAAGACTTTGACGGGCAAGACTATTACATTAGAAGTTGAGTCTTCG 215393 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| ||| ||| || || || || || ||||| || ||| Sbjct 215394 GACACCATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATCCCACCAGATCAA 215453 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| |||||||| ||||| || |||| || || | ||||||| || Sbjct 215454 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGTACACTCAGCGATTATAAC 215513 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 || ||||| || ||| | || || ||||| | || | |||||| Sbjct 215514 ATCCAAAAGGAGAGCACTTTGCACTTGGTGCTTCGCCTGCGTGGAGGA 215561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433318948048910