Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq1406 125 6e-24
>seq1406
Length=252419
Score = 125 bits (138), Expect = 6e-24
Identities = 157/213 (74%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||||||||| || ||||| | ||||| || | ||||| |||| || ||||| ||
Sbjct 215106 ATGCAAATATTCGTCAAGACCCTCACCGGAAAGACGATCACTCTCGAGGTTGAGTCTTCA 215165
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| |||||||| ||||| | || | ||| || || || || || |||||||||||
Sbjct 215166 GATACTATCGACAATGTGAAGTCGAAGATTCA-GGATAAGGAGGGTATCCCACCTGACCA 215224
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||||| | ||||| || ||||| ||||| || |||| || || || ||| |||||
Sbjct 215225 ACAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTCCGACTACAA 215284
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| ||||| || ||||| || ||||| || ||
Sbjct 215285 CATCCAAAAGGAGTCCACACTTCATTTGGTCCT 215317
Score = 111 bits (122), Expect = 1e-19
Identities = 148/203 (73%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 25009 TTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCG 25068
|||| ||||| |||||||| || ||||||| |||| || ||||| || || |||||||
Sbjct 214888 TTGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGATACTATCG 214947
Query 25069 AGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATT 25127
| | ||| | || | ||| ||||| || || || ||||||||||||||| | ||
Sbjct 214948 ACAACGTCAAGTCGAAGATTCAA-GACAAGGAGGGCATCCCACCTGACCAACAGAGACTT 215006
Query 25128 ATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAA 25187
|| ||||| || || ||| | || || | ||||| | || |||||||| |||||
Sbjct 215007 ATCTTTGCTGGGAAGCAACTTGAGGACGGCCGCACCCTTTCGGACTACAATATCCAAAAG 215066
Query 25188 GAATCCACGCTACATTTAGTGCT 25210
||||| || ||||| || || ||
Sbjct 215067 GAATCTACTCTACACTTGGTTCT 215089
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||||||||| || || | || ||| | ||||| ||||| ||
Sbjct 215334 ATGCAGATCTTCGTTAAGACTTTGACGGGCAAGACTATTACATTAGAAGTTGAGTCTTCG 215393
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || || | ||| ||| ||| || || || || || ||||| || |||
Sbjct 215394 GACACCATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATCCCACCAGATCAA 215453
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | ||||| |||||||| ||||| || |||| || || | ||||||| ||
Sbjct 215454 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGTACACTCAGCGATTATAAC 215513
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226
|| ||||| || ||| | || || ||||| | || | ||||||
Sbjct 215514 ATCCAAAAGGAGAGCACTTTGCACTTGGTGCTTCGCCTGCGTGGAGGA 215561
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433318948048910
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |