Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq908 105 7e-18 >seq908 Length=77775 Score = 105 bits (116), Expect = 7e-18 Identities = 196/287 (68%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || |||||||| | || || || | ||||| |||| |||||||| |||||| Sbjct 44976 ATATAGGTATCGATGAGGAGGGAGTATGTCTCAGAGTGGATGTTCTCCATCATGATTTGG 44917 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 ||||||||||| ||| || || | ||| || ||||| || | ||| | ||| Sbjct 44916 AATCCGTAGAAGAATCGGGCCTCGGGGATTTGGACTTCACTGCTGAAGCGCTCGAGGAGG 44857 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || || ||||| || || || || || || || ||||| | | || || || | Sbjct 44856 TTCTCGTTGACAATCCCGTCAGAGGCAGCGAAGAAAGCGAGGACGTGGGAGATGAAGTAA 44797 Query 93542 TTCTCATCATCTTTAAGC---TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598 ||| ||||| || ||| || | ||| ||| ||||| || || ||||| | ||| Sbjct 44796 CGCTCGTCATCGTTGAGCTTGTTGTTCCAGTCGTGGAGATCCTTGGATAGATCAATCTCT 44737 Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 ||| ||||||| || || ||||| || || |||||||| | ||| || Sbjct 44736 TCGGCAGTCCAGAATGAAGCTTCGGCCTTCTTGTACATTTGCCAGAT 44690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556848869257360