Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq1406 125 6e-24
seq861 105 6e-18
>seq1406
Length=252419
Score = 125 bits (138), Expect = 6e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || || | ||||| || ||| ||||||| || || || | |
Sbjct 215106 ATGCAAATATTCGTCAAGACCCTCACCGGAAAGACGATCACTCTCGAGGTTGAGTCTTCA 215165
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | ||| || | || || ||||| || ||||||||||| ||||| || |||
Sbjct 215166 GATACTATCGACAATGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTGACCAA 215225
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || || || ||||| || || |||||| ||| ||| | ||||| ||||||
Sbjct 215226 CAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTCCGACTACAAC 215285
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427
|| ||||| || ||||| | ||||| ||
Sbjct 215286 ATCCAAAAGGAGTCCACACTTCATTTGGT 215314
Score = 114 bits (126), Expect = 1e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 22229 TTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGG 22288
|||| || || || ||||| || || |||| || || || || || | ||||| | |
Sbjct 214888 TTGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGATACTATCG 214947
Query 22289 ACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTA 22348
|| | |||| || ||||||||||||||||| || ||||| || ||||| | ||||
Sbjct 214948 ACAACGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCACCTGACCAACAGAGACTTA 215007
Query 22349 TATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAG 22408
| ||||| || || || | ||||| ||||||| | || || ||||| || ||||| |
Sbjct 215008 TCTTTGCTGGGAAGCAACTTGAGGACGGCCGCACCCTTTCGGACTACAATATCCAAAAGG 215067
Query 22409 AATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|||| || |||| || ||| | ||| | || || |||
Sbjct 215068 AATCTACTCTACACTTGGTTCTCCGACTCCGTGGTGGT 215105
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || ||||| ||||| || || || || | || | ||||| || | |
Sbjct 215334 ATGCAGATCTTCGTTAAGACTTTGACGGGCAAGACTATTACATTAGAAGTTGAGTCTTCG 215393
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || || |||| ||| || || || ||||||||||| ||||| ||||||
Sbjct 215394 GACACCATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATCCCACCAGATCAA 215453
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || || |||||||| || || |||||| ||| || || |||||| |||
Sbjct 215454 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGTACACTCAGCGATTATAAC 215513
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| ||||| || ||| | || || || | || |||| |||||
Sbjct 215514 ATCCAAAAGGAGAGCACTTTGCACTTGGTGCTTCGCCTGCGTGGAGG 215560
Score = 102 bits (112), Expect = 7e-17
Identities = 127/174 (73%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|||||||| || |||| ||||| ||||| | |||| ||| | || | ||||
Sbjct 214619 ACCGGTAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACCATCGATAACGTCAAGTCC 214678
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| ||||| || ||||| |||||| | || |||||||| ||
Sbjct 214679 AAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAGCAACGTTTGATCTTTGCCGGAAAG 214738
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416
||| | ||||| || || | || ||||||||||| || || || ||||||
Sbjct 214739 CAGCTCGAGGACGGACGTACTCTATCTGATTACAACATCCAGAAGGAGTCCACC 214792
>seq861
Length=344942
Score = 105 bits (116), Expect = 6e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || || |||| || || || ||| | | || || | || || |||||
Sbjct 25378 ACGGGCAAGACTATCACCCTCGAGGTCGAATCGAGTGACACGATTGATAATGTCAAATCC 25437
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| ||||| || ||||||||||| || || || |||||||||
Sbjct 25438 AAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAACAACGCCTAATCTTCGCCGGCAAA 25497
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
|| | || || ||||||| |||| || |||||||| || || || || ||| | |||
Sbjct 25498 CAACTCGAAGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCAACCCTTCAT 25557
Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445
| || || || | || |||||
Sbjct 25558 CTCGTCTTACGTCTACGTGGAGG 25580
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419719232144410
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |