Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1406 170 4e-37 seq1483 138 2e-27 >seq1406 Length=252419 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | ||||| || || |||||||| ||||||||||| || ||||| Sbjct 215332 CCACCACGAAGACGAAGGACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAC 215273 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || || ||||| || ||||| ||||||| |||||||| ||||| Sbjct 215272 AAGGTTCGGCCATCCTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGG 215213 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || |||||||| | ||| || ||||| || |||| || || || Sbjct 215212 ATACCCTCCTTATCCTGAATCTTCGACTTCACATTGTCGATAGTATCTGAAGACTCAACC 215153 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || ||||| |||||||||||||||||||| ||||| Sbjct 215152 TCGAGAGTGATCGTCTTTCCGGTGAGGGTCTTGACGAATATTTGCAT 215106 Score = 163 bits (180), Expect = 5e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| || ||||| | |||||||| | ||| ||| |||||||||||||||||| Sbjct 215561 TCCTCCACGCAGGCGAAGCACCAAGTGCAAAGTGCTCTCCTTTTGGATGTTATAATCGCT 215502 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 |||||| | ||||| || || ||||| |||||||| || | || ||||| || ||||| Sbjct 215501 GAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGG 215442 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || || ||||| || || ||||||| |||||| || |||||||| | || || || Sbjct 215441 GATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATGGTGTCCGAAGACTCAAC 215382 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| || || || || || ||||| | ||||| ||||| |||||||| Sbjct 215381 TTCTAATGTAATAGTCTTGCCCGTCAAAGTCTTAACGAAGATCTGCAT 215334 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | ||||||||||| || || || |||||||| || || || || Sbjct 215104 CCACCACGGAGTCGGAGAACCAAGTGTAGAGTAGATTCCTTTTGGATATTGTAGTCCGAA 215045 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||||| || || || ||||| |||||||| ||||| Sbjct 215044 AGGGTGCGGCCGTCCTCAAGTTGCTTCCCAGCAAAGATAAGTCTCTGTTGGTCAGGTGGG 214985 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||||||||| | ||||||| ||||| || || | || || || Sbjct 214984 ATGCCCTCCTTGTCTTGAATCTTCGACTTGACGTTGTCGATAGTATCCGAGGACTCAACC 214925 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 || | ||||||||| || || || | ||||||||| Sbjct 214924 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGAC 214890 Score = 127 bits (140), Expect = 4e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||| ||| || |||||||| || |||||||| ||||| || Sbjct 214821 CCGCCACGAAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAT 214762 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| ||||| || || | | ||| || || || ||| Sbjct 214761 AGAGTACGTCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAAACGTTGCTGATCTGGGGGA 214702 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 214701 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTATCGATGGTGTCGGACGACTCCACC 214642 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | |||||| || || || |||| Sbjct 214641 TCAAGGGTGATAGTCTTACCGGTGA 214617 >seq1483 Length=199378 Score = 138 bits (152), Expect = 2e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 ||||||||||| ||||| || || || | ||||| || | ||||| || ||||| || Sbjct 28636 TTTTGGATGTTGTAATCTGAAAGAGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGATC 28695 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | | ||||||||| ||||| ||||| |||||||| || ||||| | |||||| || Sbjct 28696 AAACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTATCA 28755 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || ||||| | || || |||||||| || ||||| || ||||| |||||||||||||| Sbjct 28756 ATTGTGTCCGAAGACTCAACTTCCAATGTAATGGTCTTACCCGTAAGGGTCTTGACGAA 28814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921602654240080