Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq908 185 2e-41 >seq908 Length=77775 Score = 185 bits (204), Expect = 2e-41 Identities = 362/519 (70%), Gaps = 17/519 (3%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAAC 42691 |||||||| ||||||||||| || ||||| || |||||| | || | | | | || Sbjct 45079 CCCTGCATTAAGAAGAAGGCTGATTGGGCTGTCCGATGGATCCA-AGACAAGGAGTCCAC 45137 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 || | | | | || || ||||| |||| || ||||| ||||||||| || | || Sbjct 45138 CTTTGCCCAACGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTT 45197 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCG--ATGCCCGGACTCACCTTCTCGAAC 42809 |||||||||||||||| | ||| | | ||| | ||| | || || |||||||| ||| Sbjct 45198 CGCCTCCATCTTCTGGTTGAAGAA--ACGTGGCCTCATGGCTGGTCTTACCTTCTCCAAC 45255 Query 42810 GAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGC 42869 || || ||| | | || ||||| || || | ||||| || ||||| || ||||| | Sbjct 45256 GAGCTGATCTCCCGTGATGAGGGTCTCCACACCGACTTCGCATGCCTTCTCTTCTC---C 45312 Query 42870 CACCTCAGGCACAAGCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGA 42928 || | | ||| |||| | |||| |||| |||| ||||||| ||||| || || Sbjct 45313 CATTTGAAGCATC-GCCCAAGCAAGGCTGCAGTCCAGGCCGTCATCACCGAGGCTGTTGA 45371 Query 42929 GATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCC-CTGGTCGGCATGAACCACG 42987 ||| ||| | |||||| | || || | || || ||| | || ||||||||||| | Sbjct 45372 GATTGAGCAAGAGTTCTTGACTGAGGCTCTTCCT-TGTGCACTTCTCGGCATGAACGCCA 45430 Query 42988 ACCTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCT 43045 |||| ||| |||| ||||| ||| |||||| || | |||||| | | || | Sbjct 45431 ACCTGATGAAGCAA-TACATTGAGTTCGTCGCTGATCGTCTCCTCCTTTCCCTCGGCAAT 45489 Query 43046 CAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGG 43105 || | | ||||| | ||| ||||||||||||||||||||||| | | || Sbjct 45490 GAGAAG-GTTTACAAGGTTGCCAACCCATTCGACTTTATGGAGAACATCTCCCTTGCCGG 45548 Query 43106 CAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 ||||||||||| ||||||||||| || || || ||||| Sbjct 45549 AAAGACCAACTTCTTCGAGAAGCGTGTTGCTGATTACCA 45587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944318967532640