Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1406 152 1e-31 seq908 105 2e-17 seq1483 93.3 1e-13 seq1472 87.8 4e-12 >seq1406 Length=252419 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | ||||| ||| || |||||||| || ||||||| Sbjct 215332 CCACCACGAAGACGAAGGACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAC 215273 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || || || ||||| || |||||||| || || |||||||| | |||| Sbjct 215272 AAGGTTCGGCCATCCTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGG 215213 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || |||||||| || |||| ||||| || || |||| ||| || || || Sbjct 215212 ATACCCTCCTTATCCTGAATCTTCGACTTCACATTGTCGATAGTATCTGAAGACTCAACC 215153 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||||||||| ||||| || |||||||||||||| ||||| Sbjct 215152 TCGAGAGTGATCGTCTTTCCGGTGAGGGTCTTGACGAATATTTGCAT 215106 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 ||||| || || || | ||| || | || | ||||| || |||||||| ||||| ||| Sbjct 215563 TGTCCTCCACGCAGGCGAAGCACCAAGTGCAAAGTGCTCTCCTTTTGGATGTTATAATCG 215504 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 ||| || || || || || ||||| || || ||||| |||| ||||||||| | Sbjct 215503 CTGAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGT 215444 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || ||||||||||| || | || || || || || | || || || Sbjct 215443 GGGATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATGGTGTCCGAAGACTCA 215384 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || ||||| || |||| |||||| ||||| |||||||| Sbjct 215383 ACTTCTAATGTAATAGTCTTGCCCGTCAAAGTCTTAACGAAGATCTGCAT 215334 Score = 118 bits (130), Expect = 3e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| || || | || | || ||| ||||||||||| ||||| | Sbjct 215104 CCACCACGGAGTCGGAGAACCAAGTGTAGAGTAGATTCCTTTTGGATATTGTAGTCCGAA 215045 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | ||| || || || ||||| || | |||||| | |||| Sbjct 215044 AGGGTGCGGCCGTCCTCAAGTTGCTTCCCAGCAAAGATAAGTCTCTGTTGGTCAGGTGGG 214985 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || || || |||| || ||||| || |||| ||| || || || Sbjct 214984 ATGCCCTCCTTGTCTTGAATCTTCGACTTGACGTTGTCGATAGTATCCGAGGACTCAACC 214925 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||||| ||||| ||||| ||||||| |||||||| Sbjct 214924 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGAC 214890 >seq908 Length=77775 Score = 105 bits (116), Expect = 2e-17 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 269117 AAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGA 269176 |||||||| | ||| ||| | || ||| | | |||| ||||| ||| | || |||| Sbjct 45380 AAGAGTTCTTGACTGAGGCTCTTCCTTGTGCACTTCTCGGCATGAACGCCAACCTGATGA 45439 Query 269177 ATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGT 269236 | ||||| || || ||||| ||||||||| || || | ||||| ||||||| || | Sbjct 45440 AGCAATACATTGAGTTCGTCGCTGATCGTCTCCTCCTTTCCCTCGGCAATGAGAAGGTTT 45499 Query 269237 ACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACT 269296 |||| || || |||| ||||||||| || || || | |||||||| |||| Sbjct 45500 ACAAGGTTGCCAACCCATTCGACTTTATGGAGAACATCTCCCTTGCCGGAAAGACCAACT 45559 Query 269297 TCTTCGAAAAGCGTGT 269312 ||||||| |||||||| Sbjct 45560 TCTTCGAGAAGCGTGT 45575 >seq1483 Length=199378 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||| || || || | || |||||||| || || | ||| ||||| ||||||||| Sbjct 28636 TTTTGGATGTTGTAATCTGAAAGAGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGATC 28695 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | ||| ||||| |||||| || || || |||||||| || | || || || || Sbjct 28696 AAACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTATCA 28755 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | || || || ||||| | || || ||||| || || || ||||||||||| Sbjct 28756 ATTGTGTCCGAAGACTCAACTTCCAATGTAATGGTCTTACCCGTAAGGGTCTTGACGAA 28814 >seq1472 Length=199535 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/199 (72%), Gaps = 8/199 (4%) Strand=Plus/Plus Query 326054 ATGTGAGTTCCGTCAACATCCGCGTCGGTCATGATCATCACATGACCGTAACGAAGCGAG 326113 || ||| |||| || |||| |||| ||||||||||| ||| ||||||||||| Sbjct 181089 ATATGACTTCCATCGTGATCCTGATCGGCCATGATCATCAGATGCCCGTAACGAAGACCA 181148 Query 326114 GACGTGTCTTTGTACACTT-TACCGGTTTGAAGGCCGAGAATTTGTTTGA-GCGCTGTGA 326171 |||||| ||||| |||| | |||| || ||| |||| |||||||| | ||| || Sbjct 181149 TTCGTGTCGTTGTATACTTGTTTGTGTTTCAA-GCCAAGAAATTGTTTGATGTTCTG-GA 181206 Query 326172 TTTCTTCGTTCTTCGTGATGCTTG--CCACGGATGCATCGCGGACGTTCAATAGTTTTCC 326229 |||| | ||||||||||| ||| | | |||||| || ||||| | | ||| || Sbjct 181207 TTTCGGCATTCTTCGTGAT--TTGATCGATACTTGCATCTCGAACGTTGAGCAATTTACC 181264 Query 326230 ACGAAGAGGGAACACTCCA 326248 ||||| ||||| || ||| Sbjct 181265 TCGAAGCGGGAATACACCA 181283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179628494052092