Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq843 181 1e-40 >seq843 Length=104768 Score = 181 bits (200), Expect = 1e-40 Identities = 485/736 (66%), Gaps = 4/736 (1%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||| |||| ||||| ||| || || || || | |||| | || || || ||||| Sbjct 63280 GCCTCCCCAACCCTCTTCGCAGCTGGCACACCACAGGCACAACTTTCATCCTGCTTCCTT 63339 Query 93952 AT-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGAC 94010 || ||| | |||| ||| ||| || |||| ||||| | ||| || || | Sbjct 63340 ATCGAC-ATGAAGGAGGACAGCATTGATGGTATTTACGACACGTTAAAGATTTGCGCCAT 63398 Query 94011 CATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTC 94070 || ||||| | || || || ||||| ||| ||| ||| | ||||| | || | Sbjct 63399 GATTTCAAAGAATGCTGGTGGTATCGGTCTCAATGTTCACAGAATCCGTGCGACCGGCGC 63458 Query 94071 CTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAA 94130 || ||| |||||| || || | ||||||||| |||| ||||||||| | || ||||| Sbjct 63459 TTATATCGCCGGTACTAACGGAAACTCCAACGGAATCGTTCCTATGCTCAGAGTTTTCAA 63518 Query 94131 CAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTA 94190 |||| | || | || || || || |||||| | | | ||| ||||||| |||| Sbjct 63519 CAACACCGCCAGATATGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCTTTCGCCATCTA 63578 Query 94191 TCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAA 94250 || ||||| |||||||| || || | ||| ||||||| ||||||||||| || || Sbjct 63579 CCTTGAGCCATGGCACGCCGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCATGGAAA 63638 Query 94251 CGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAA 94310 || || | ||| | || |||||||||||||||||| | ||||| || || ||||| Sbjct 63639 GGAGGAGGTTCGTGCCCGTGATCTCTTCTACGCTCTCTGGATTCCAGATCTCTTCATGAA 63698 Query 94311 ACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTC 94370 || || || || || || ||||| | | || || || || ||||| || || | Sbjct 63699 GCGTGTTGAAAAGAATCTCGACTGGACATTGATGTGCCCTAACGAGTGTCCTGGTTTGGC 63758 Query 94371 CGACGTTTGTGGATCGCG-TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGG 94429 ||| || | || | || || |||| ||||||| ||||| || ||||||||| Sbjct 63759 CGATGTCTACGG-TGACGAGTTCGAAGCGTTGTATGAGAAATACGAGTCTGAGGGCAAGG 63817 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489 | ||| || | || ||||| ||| | ||| | || | || |||| Sbjct 63818 GTCGCAAGAGCATCAAAGCCCAAAAGCTTTGGTACTCTATCCTTGAGGCTCAAACTGAGA 63877 Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACC 94549 | || | || | ||| | | |||||| || |||| ||| |||||| || | | Sbjct 63878 CCGGAAACCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGCAACCAAAAGAATC 63937 Query 94550 TCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACG 94609 |||| ||| ||||| || ||||||| || || |||||||| | | || || | Sbjct 63938 TCGGTACCATCCGAAGCTCCAACTTGTGCACTGAAATCGTCGAGTACTGTGCACCAGATG 63997 Query 94610 AGATTGCTGTGTGTAA 94625 || | ||||| || || Sbjct 63998 AGGTCGCTGTTTGCAA 64013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494712600555440