Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq1406 96.9 3e-15
>seq1406
Length=252419
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
||| || || | || | |||||| || | || ||| ||||| || || |||||||
Sbjct 215561 TCCTCCACGCAGGCGAAGCACCAAGTGCAAAGTGCTCTCCTTTTGGATGTTATAATCGCT 215502
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
| || || ||| || | || || || ||| | ||||||||||| ||||| || ||
Sbjct 215501 GAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGG 215442
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||| ||| ||| || ||||| | || | |||||||| | ||| ||
Sbjct 215441 GATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATGGTGTCCGAAGACTCAAC 215382
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| | || | || ||||| |||| ||| || || || ||||||||
Sbjct 215381 TTCTAATGTAATAGTCTTGCCCGTCAAAGTCTTAACGAAGATCTGCAT 215334
Score = 93.3 bits (102), Expect = 4e-14
Identities = 153/218 (70%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||| | ||||| |||| ||||| || ||||| |||||||| ||
Sbjct 215104 CCACCACGGAGTCGGAGAACCAAGTGTAGAGTAGATTCCTTTTGGATATTGTAGTCCGAA 215045
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || || || || ||||| |||| | || ||| || || || ||
Sbjct 215044 AGGGTGCGGCCGTCCTCAAGTTGCTTCCCAGCAAAGATAAGTCTCTGTTGGTCAGGTGGG 214985
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|||||||||||||| || ||| ||||| |||| |||| || |||| ||| ||
Sbjct 214984 ATGCCCTCCTTGTCTTGAATCTTCGACTTGACGTTG-TCGATAGTATCCGAGGACTCAAC 214926
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103
|||| ||| | || |||||||||| || || ||||
Sbjct 214925 CTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACAA 214888
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475490612395360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |