Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1406 105 6e-18 >seq1406 Length=252419 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45150 TCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTAT 45209 ||||||||||| ||||||||||||| || ||| |||||||| || || ||| | Sbjct 215524 TCCTTTTGGATGTTATAATCGCTGAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAA 215465 Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||||||| || || || || || || || || ||||| || || ||| |||| Sbjct 215464 ATCAATCGCTGTTGATCTGGTGGGATACCCTCCTTATCCTGGATCTTTGACTTGACATTA 215405 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 || | |||||| |||||||| ||||| | |||| || ||||| || | ||| || || Sbjct 215404 TCAATGGTGTCCGAAGACTCAACTTCTAATGTAATAGTCTTGCCCGTCAAAGTCTTAACG 215345 Query 45330 AAAATTTGCAT 45340 || || ||||| Sbjct 215344 AAGATCTGCAT 215334 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || || ||||||||||| || || ||| | |||| ||| |||||||| Sbjct 215309 ATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGGCCATCCTCCAATTG 215250 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 || |||||| | || | ||| || ||||| || || || || || ||||| ||||| || Sbjct 215249 CTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATCCTGAATCTT 215190 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | || | || || |||||||| || |||||||| | ||| || ||||| Sbjct 215189 CGACTTCACATTGTCGATAGTATCTGAAGACTCAACCTCGAGAGTGATCGTCTTTCCGGT 215130 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || |||||||| Sbjct 215129 GAGGGTCTTGACGAATATTTGCAT 215106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451993515831440