Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq843 188 9e-43 seq908 129 7e-25 >seq843 Length=104768 Score = 188 bits (208), Expect = 9e-43 Identities = 1120/1771 (63%), Gaps = 51/1771 (3%) Strand=Plus/Minus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 |||| ||||||||| || ||| | | ||||| |||||||| || |||||||| | Sbjct 64933 TGAATTGAATGGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGAC 64874 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 || |||||||| | | |||||| || | ||| | ||||| | |||| Sbjct 64873 CCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTCATGT 64814 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 || |||||| ||| |||||||| ||||| || || || || ||||| | | | Sbjct 64813 GGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGACGA 64754 Query 115706 CATCCTTCAT--CTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGAT 115763 | | | | | ||| ||||| || || |||| || ||| |||||| | ||||| Sbjct 64753 --TGGTACGTTGCGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCCGGGAT 64696 Query 115764 ATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCTTTGA 115823 | | ||||||||| || ||||| | | || | | |||||| | | || Sbjct 64695 GTTTGGAACATTTTGGATTGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCGGA 64636 Query 115824 CCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACC 115883 ||| || || || | |||||||| | || |||||||| || || || Sbjct 64635 CCAAAGTCCCATATCGACGAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAATTCTCC 64576 Query 115884 CGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 115942 || ||| |||| ||| |||||||||| || |||||||| |||||||| || | Sbjct 64575 AGCAAGGACACGTCG-AGAGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTAA-AT 64518 Query 115943 CCAAGATTTGGGCTG-TGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGA 116001 |||||| || | ||| | |||||| ||||| || || | ||| | ||||| |||| | Sbjct 64517 CCAAGAATTTGACTGGTACTGGCTGTTGGCATAGGAGCGACGAGCAAACTGTTACGGATA 64458 Query 116002 CCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTT--GTCTCCC 116059 || || ||| ||| | | |||| || | || | | || | | Sbjct 64457 CCGTGTTGAGAGATCTGTTGCTTCAAGCTAGCCCAATCCCAAA-GATCGGTAGGTGTGAC 64399 Query 116060 CCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCAT 116119 | ||||||| ||| | ||||| || | || || ||||| || | | | ||||||| Sbjct 64398 AC-CCCACATGTCATATTGGAGCTCGCCCTTAGAGGCAGGCGAGCCTTGATAAGTCTCAT 64340 Query 116120 ATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCT 116179 |||| || | || || ||||| || | || | || ||||| || || |||| Sbjct 64339 ATGGACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAGCGTGGTAAATGGTCT 64280 Query 116180 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACG--GCACAA 116237 | ||||| | || | ||||||||| ||| || || | ||||| | | | Sbjct 64279 CGAAAATTTGGATGTTGAGGTGCTTGGCCTCCGGGGATTCGAAAGGAAGACGAAGAGCCA 64220 Query 116238 AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA 116297 | || |||| || |||||||| |||||||| |||| || | || | | ||| Sbjct 64219 AG--AAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATTGCT 64162 Query 116298 CTTTCGAGCGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 116354 ||||| || ||| || || || | || |||||||| | |||| | || || Sbjct 64161 CTTTCTTGC---CTCAGGAACCGGGTAGTAGTTGACATCGATAATCTTATTCAAGTTCTT 64105 Query 116355 GGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT 116414 | |||||| | || || |||||||||| | | ||| || || |||| |||| Sbjct 64104 GACGACAACTTGGCAGACCTCGTGAAGCTTTTGGAAGTCATAAGTGGCGGTCTTCTCATC 64045 Query 116415 GACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGT 116474 ||||| | || || || | || |||| ||| || |||| | |||||| || Sbjct 64044 AACATAGGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGGTGCACA 63985 Query 116475 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534 |||||| | ||||| || ||||| || || || ||||| || | |||||||| || Sbjct 63984 GTACTCGACGATTTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTT 63925 Query 116535 TGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGA 116594 |||| ||| || ||||||||||| ||||| | || | || ||||| ||||| | Sbjct 63924 GCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGC 63865 Query 116595 CTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---C 116651 || || |||| | ||| | | |||| | || ||| || |||| | Sbjct 63864 CTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGA---TGCTCTTG---CGACCCTTGCC 63811 Query 116652 CTC---CTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCC 116708 ||| |||||| || || | || || ||||| ||||| | || | | || Sbjct 63810 CTCAGACTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACC 63751 Query 116709 TGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 116768 || || | || || | | | ||| | | || ||||| ||||||||||| Sbjct 63750 AGGACACTCGTTAGGGCACATCAATGTCCAGTCGAGATTCTTTTCAACACGCTTCATGAA 63691 Query 116769 GAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTG 116828 ||| ||||| |||||||| || |||||||||| || ||| | || || | || || Sbjct 63690 GAGATCTGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCATG 63631 Query 116829 ATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 116888 || || | || | || || | | ||| |||||||| || || ||||| | || Sbjct 63630 GTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGC 63571 Query 116889 GATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAA 116942 || | || | |||| |||| | || | ||||| || || || ||| || Sbjct 63570 GAAAGCACCAGGACGCTTG---TTACCACCTTGATCAACATATCTGGCGGTGTTGTTGAA 63514 Query 116943 TACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGAC 117000 || | ||||| |||| ||| || | || | || || || || ||| ||| | | | Sbjct 63513 AACTCTGAGCATAGGAACGATTCCGTTGGAGTTTCCGTTAGTACCGGCGATATAAGCGCC 63454 Query 117001 TTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGT 117060 | | || | || ||| | | | ||| ||||| || || |||||| || Sbjct 63453 --GGTCGCACGGATTCTGTGAACATTGAGACCGATACCACCAGCATTCTTTGAAATCATG 63396 Query 117061 GCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGG 117120 ||||| | | | || |||| || ||||| || ||| |||| | |||| ||| Sbjct 63395 GCGCAAATCTTTAACGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATAAGG 63336 Query 117121 AAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGG 117180 |||||| || | ||||| | |||||| ||||| |||||||||||| | |||||| Sbjct 63335 AAGCAGGATGAAAGTTGTGCCTGTGGTGTGCCAGCTGCGAAGAGGGTTGGGGAGGCGTGG 63276 Query 117181 ATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCC 117238 |||| || ||| ||||||| | ||||||||| | | ||| || || || | Sbjct 63275 GTGAA-GTA-TTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCAC 63218 Query 117239 CGTGAATACCGATTGAGACCCGCATAAACAT 117269 ||||||| |||| | || ||||||| ||| Sbjct 63217 CGTGAATTCCGACCGCAACACGCATAATCAT 63187 >seq908 Length=77775 Score = 129 bits (142), Expect = 7e-25 Identities = 297/445 (67%), Gaps = 12/445 (3%) Strand=Plus/Minus Query 127241 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATAAAATCAAAT 127300 || ||||||||||||||||| ||||| || | ||| ||| ||||||||||| || ||| Sbjct 45575 ACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATGTTCTCCATAAAGTCGAAT 45516 Query 127301 GGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACGATCCG 127355 ||||| | ||| || | ||| | || |||||||||||| | Sbjct 45515 GGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAGGGAAAG-----GAGGAGACGATCAG 45461 Query 127356 AGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGA 127415 |||| |||||||||| | |||| | | |||||| |||| || ||| || | Sbjct 45460 CGACGAACTCAATGTATTGCTTCATCAGGTTGGCGTTCATGCCGAGAAGTGCACAAGGAA 45401 Query 127416 GCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTGAATAG 127475 | || || | |||| | | |||||| || ||||| || | || ||| || | | Sbjct 45400 GAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACGGCCTGGACTG 45341 Query 127476 TGTCCACCCCAGGTCTATTGCGTAAAGTCTT-GAAGAGTTCCACAGCAAACTCTTGGTGG 127534 || | || | || || | || | |||||| || || || |||| Sbjct 45340 CAGCCTTGCTTGGGCGAT-GCTTCAAATGGGAGAAGAGAAGGCATGCGAAGTCGGTGTGG 45282 Query 127535 AGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGC 127594 |||||||| ||||||||||| || || || |||||| ||||| | |||||| || || Sbjct 45281 AGACCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTAAGACCAGCCATGAGGCCACGT 45222 Query 127595 TTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCG 127654 |||||||||||||| || | || || ||| ||||||||| ||||| ||| ||| Sbjct 45221 TTCTTCAACCAGAAGATGGAGGCGAAAGAACCACTGAAGAAGATACCCTCAACAGCGGCG 45162 Query 127655 AACGCAAATAGACGCTCGGCAAAGG 127679 || |||| ||||| | |||||||| Sbjct 45161 AAGGCAACAAGACGTTGGGCAAAGG 45137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613494055608240