Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq843 188 9e-43
seq908 129 7e-25
>seq843
Length=104768
Score = 188 bits (208), Expect = 9e-43
Identities = 1120/1771 (63%), Gaps = 51/1771 (3%)
Strand=Plus/Minus
Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585
|||| ||||||||| || ||| | | ||||| |||||||| || |||||||| |
Sbjct 64933 TGAATTGAATGGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGAC 64874
Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645
|| |||||||| | | |||||| || | ||| | ||||| | ||||
Sbjct 64873 CCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTCATGT 64814
Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705
|| |||||| ||| |||||||| ||||| || || || || ||||| | | |
Sbjct 64813 GGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGACGA 64754
Query 115706 CATCCTTCAT--CTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGAT 115763
| | | | | ||| ||||| || || |||| || ||| |||||| | |||||
Sbjct 64753 --TGGTACGTTGCGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCCGGGAT 64696
Query 115764 ATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCTTTGA 115823
| | ||||||||| || ||||| | | || | | |||||| | | ||
Sbjct 64695 GTTTGGAACATTTTGGATTGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCGGA 64636
Query 115824 CCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACC 115883
||| || || || | |||||||| | || |||||||| || || ||
Sbjct 64635 CCAAAGTCCCATATCGACGAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAATTCTCC 64576
Query 115884 CGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 115942
|| ||| |||| ||| |||||||||| || |||||||| |||||||| || |
Sbjct 64575 AGCAAGGACACGTCG-AGAGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTAA-AT 64518
Query 115943 CCAAGATTTGGGCTG-TGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGA 116001
|||||| || | ||| | |||||| ||||| || || | ||| | ||||| |||| |
Sbjct 64517 CCAAGAATTTGACTGGTACTGGCTGTTGGCATAGGAGCGACGAGCAAACTGTTACGGATA 64458
Query 116002 CCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTT--GTCTCCC 116059
|| || ||| ||| | | |||| || | || | | || | |
Sbjct 64457 CCGTGTTGAGAGATCTGTTGCTTCAAGCTAGCCCAATCCCAAA-GATCGGTAGGTGTGAC 64399
Query 116060 CCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCAT 116119
| ||||||| ||| | ||||| || | || || ||||| || | | | |||||||
Sbjct 64398 AC-CCCACATGTCATATTGGAGCTCGCCCTTAGAGGCAGGCGAGCCTTGATAAGTCTCAT 64340
Query 116120 ATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCT 116179
|||| || | || || ||||| || | || | || ||||| || || ||||
Sbjct 64339 ATGGACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAGCGTGGTAAATGGTCT 64280
Query 116180 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACG--GCACAA 116237
| ||||| | || | ||||||||| ||| || || | ||||| | | |
Sbjct 64279 CGAAAATTTGGATGTTGAGGTGCTTGGCCTCCGGGGATTCGAAAGGAAGACGAAGAGCCA 64220
Query 116238 AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA 116297
| || |||| || |||||||| |||||||| |||| || | || | | |||
Sbjct 64219 AG--AAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATTGCT 64162
Query 116298 CTTTCGAGCGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 116354
||||| || ||| || || || | || |||||||| | |||| | || ||
Sbjct 64161 CTTTCTTGC---CTCAGGAACCGGGTAGTAGTTGACATCGATAATCTTATTCAAGTTCTT 64105
Query 116355 GGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT 116414
| |||||| | || || |||||||||| | | ||| || || |||| ||||
Sbjct 64104 GACGACAACTTGGCAGACCTCGTGAAGCTTTTGGAAGTCATAAGTGGCGGTCTTCTCATC 64045
Query 116415 GACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGT 116474
||||| | || || || | || |||| ||| || |||| | |||||| ||
Sbjct 64044 AACATAGGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGGTGCACA 63985
Query 116475 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534
|||||| | ||||| || ||||| || || || ||||| || | |||||||| ||
Sbjct 63984 GTACTCGACGATTTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTT 63925
Query 116535 TGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGA 116594
|||| ||| || ||||||||||| ||||| | || | || ||||| ||||| |
Sbjct 63924 GCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGC 63865
Query 116595 CTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---C 116651
|| || |||| | ||| | | |||| | || ||| || |||| |
Sbjct 63864 CTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGA---TGCTCTTG---CGACCCTTGCC 63811
Query 116652 CTC---CTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCC 116708
||| |||||| || || | || || ||||| ||||| | || | | ||
Sbjct 63810 CTCAGACTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACC 63751
Query 116709 TGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 116768
|| || | || || | | | ||| | | || ||||| |||||||||||
Sbjct 63750 AGGACACTCGTTAGGGCACATCAATGTCCAGTCGAGATTCTTTTCAACACGCTTCATGAA 63691
Query 116769 GAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTG 116828
||| ||||| |||||||| || |||||||||| || ||| | || || | || ||
Sbjct 63690 GAGATCTGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCATG 63631
Query 116829 ATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 116888
|| || | || | || || | | ||| |||||||| || || ||||| | ||
Sbjct 63630 GTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGC 63571
Query 116889 GATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAA 116942
|| | || | |||| |||| | || | ||||| || || || ||| ||
Sbjct 63570 GAAAGCACCAGGACGCTTG---TTACCACCTTGATCAACATATCTGGCGGTGTTGTTGAA 63514
Query 116943 TACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGAC 117000
|| | ||||| |||| ||| || | || | || || || || ||| ||| | | |
Sbjct 63513 AACTCTGAGCATAGGAACGATTCCGTTGGAGTTTCCGTTAGTACCGGCGATATAAGCGCC 63454
Query 117001 TTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGT 117060
| | || | || ||| | | | ||| ||||| || || |||||| ||
Sbjct 63453 --GGTCGCACGGATTCTGTGAACATTGAGACCGATACCACCAGCATTCTTTGAAATCATG 63396
Query 117061 GCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGG 117120
||||| | | | || |||| || ||||| || ||| |||| | |||| |||
Sbjct 63395 GCGCAAATCTTTAACGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATAAGG 63336
Query 117121 AAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGG 117180
|||||| || | ||||| | |||||| ||||| |||||||||||| | ||||||
Sbjct 63335 AAGCAGGATGAAAGTTGTGCCTGTGGTGTGCCAGCTGCGAAGAGGGTTGGGGAGGCGTGG 63276
Query 117181 ATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCC 117238
|||| || ||| ||||||| | ||||||||| | | ||| || || || |
Sbjct 63275 GTGAA-GTA-TTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCAC 63218
Query 117239 CGTGAATACCGATTGAGACCCGCATAAACAT 117269
||||||| |||| | || ||||||| |||
Sbjct 63217 CGTGAATTCCGACCGCAACACGCATAATCAT 63187
>seq908
Length=77775
Score = 129 bits (142), Expect = 7e-25
Identities = 297/445 (67%), Gaps = 12/445 (3%)
Strand=Plus/Minus
Query 127241 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATAAAATCAAAT 127300
|| ||||||||||||||||| ||||| || | ||| ||| ||||||||||| || |||
Sbjct 45575 ACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATGTTCTCCATAAAGTCGAAT 45516
Query 127301 GGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACGATCCG 127355
||||| | ||| || | ||| | || |||||||||||| |
Sbjct 45515 GGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAGGGAAAG-----GAGGAGACGATCAG 45461
Query 127356 AGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGA 127415
|||| |||||||||| | |||| | | |||||| |||| || ||| || |
Sbjct 45460 CGACGAACTCAATGTATTGCTTCATCAGGTTGGCGTTCATGCCGAGAAGTGCACAAGGAA 45401
Query 127416 GCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTGAATAG 127475
| || || | |||| | | |||||| || ||||| || | || ||| || | |
Sbjct 45400 GAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACGGCCTGGACTG 45341
Query 127476 TGTCCACCCCAGGTCTATTGCGTAAAGTCTT-GAAGAGTTCCACAGCAAACTCTTGGTGG 127534
|| | || | || || | || | |||||| || || || ||||
Sbjct 45340 CAGCCTTGCTTGGGCGAT-GCTTCAAATGGGAGAAGAGAAGGCATGCGAAGTCGGTGTGG 45282
Query 127535 AGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGC 127594
|||||||| ||||||||||| || || || |||||| ||||| | |||||| || ||
Sbjct 45281 AGACCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTAAGACCAGCCATGAGGCCACGT 45222
Query 127595 TTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCG 127654
|||||||||||||| || | || || ||| ||||||||| ||||| ||| |||
Sbjct 45221 TTCTTCAACCAGAAGATGGAGGCGAAAGAACCACTGAAGAAGATACCCTCAACAGCGGCG 45162
Query 127655 AACGCAAATAGACGCTCGGCAAAGG 127679
|| |||| ||||| | ||||||||
Sbjct 45161 AAGGCAACAAGACGTTGGGCAAAGG 45137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613494055608240
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