Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq861 114 1e-20 seq1406 100 3e-16 >seq861 Length=344942 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | || ||| || || ||||| | || |||||| ||||| |||||||| || Sbjct 25580 CCTCCACGTAGACGTAAGACGAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCCGAG 25521 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| ||||| || ||||||||||| || | ||| || || || | || Sbjct 25520 AGGGTGCGGCCGTCTTCGAGTTGTTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGGA 25461 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||||| |||||| |||| | | | |||||| |||||||| || Sbjct 25460 ATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTATCAATCGTGTCACTCGATTCGACC 25401 Query 46547 TCCACCGTGATGGTTTTGCCCGT 46569 || | ||||| || |||||||| Sbjct 25400 TCGAGGGTGATAGTCTTGCCCGT 25378 >seq1406 Length=252419 Score = 100 bits (110), Expect = 3e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || |||||||| || |||| ||||||||||| ||||| || Sbjct 214786 CTCCTTCTGGATGTTGTAATCAGATAGAGTACGTCCGTCCTCGAGCTGCTTTCCGGCAAA 214727 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || ||||| || | || | | |||||||||| |||||| ||||| | Sbjct 214726 GATCAAACGTTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 214667 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | |||||| ||| ||||| || | ||||| || || || || Sbjct 214666 ATCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTACCGGT 214619 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| ||||| || |||||||||||||| || || ||| || || || | || || Sbjct 215543 CACCAAGTGCAAAGTGCTCTCCTTTTGGATGTTATAATCGCTGAGTGTACGGCCATCCTC 215484 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 | |||||||||||||| ||||| ||||| || || | || | | |||||| ||| Sbjct 215483 CAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGGGATACCCTCCTTATCCTG 215424 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| | | | ||||| || || || || | || || || || Sbjct 215423 GATCTTTGACTTGACATTATCAATGGTGTCCGAAGACTCAACTTCTAATGTAATAGTCTT 215364 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| || ||||| ||||| ||||| Sbjct 215363 GCCCGTCAAAGTCTTAACGAAGATCTGCAT 215334 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||||||||||||||| || || ||||| |||| || || ||||| || || || Sbjct 215068 TCCTTTTGGATATTGTAGTCCGAAAGGGTGCGGCCGTCCTCAAGTTGCTTCCCAGCAAAG 215009 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | | ||| ||||| | || | || ||||||||| |||||| ||||| ||| Sbjct 215008 ATAAGTCTCTGTTGGTCAGGTGGGATGCCCTCCTTGTCTTGAATCTTCGACTTGA-CGTT 214950 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || || || || || | |||||||| ||||| |||| || || || Sbjct 214949 GTCGATAGTATCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGAC 214890 Query 46582 AA 46583 || Sbjct 214889 AA 214888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565226289767280