Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq861 114 1e-20
seq1406 100 3e-16
>seq861
Length=344942
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| | || ||| || || ||||| | || |||||| ||||| |||||||| ||
Sbjct 25580 CCTCCACGTAGACGTAAGACGAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCCGAG 25521
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| ||||| |||| ||||| || ||||||||||| || | ||| || || || | ||
Sbjct 25520 AGGGTGCGGCCGTCTTCGAGTTGTTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGGA 25461
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| | |||||||||| |||||| |||| | | | |||||| |||||||| ||
Sbjct 25460 ATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTATCAATCGTGTCACTCGATTCGACC 25401
Query 46547 TCCACCGTGATGGTTTTGCCCGT 46569
|| | ||||| || ||||||||
Sbjct 25400 TCGAGGGTGATAGTCTTGCCCGT 25378
>seq1406
Length=252419
Score = 100 bits (110), Expect = 3e-16
Identities = 123/168 (73%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||| || |||||||| || |||| ||||||||||| ||||| ||
Sbjct 214786 CTCCTTCTGGATGTTGTAATCAGATAGAGTACGTCCGTCCTCGAGCTGCTTTCCGGCAAA 214727
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| || ||||| || | || | | |||||||||| |||||| ||||| |
Sbjct 214726 GATCAAACGTTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 214667
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569
| | |||||| ||| ||||| || | ||||| || || || ||
Sbjct 214666 ATCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTACCGGT 214619
Score = 100 bits (110), Expect = 3e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||||| ||||| || |||||||||||||| || || ||| || || || | || ||
Sbjct 215543 CACCAAGTGCAAAGTGCTCTCCTTTTGGATGTTATAATCGCTGAGTGTACGGCCATCCTC 215484
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
| |||||||||||||| ||||| ||||| || || | || | | |||||| |||
Sbjct 215483 CAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGGGATACCCTCCTTATCCTG 215424
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
|||||| ||||| | | | ||||| || || || || | || || || ||
Sbjct 215423 GATCTTTGACTTGACATTATCAATGGTGTCCGAAGACTCAACTTCTAATGTAATAGTCTT 215364
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||||||| || ||||| ||||| |||||
Sbjct 215363 GCCCGTCAAAGTCTTAACGAAGATCTGCAT 215334
Score = 87.8 bits (96), Expect = 2e-12
Identities = 130/182 (71%), Gaps = 2/182 (1%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
|||||||||||||||||||| || || ||||| |||| || || ||||| || || ||
Sbjct 215068 TCCTTTTGGATATTGTAGTCCGAAAGGGTGCGGCCGTCCTCAAGTTGCTTCCCAGCAAAG 215009
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| | | ||| ||||| | || | || ||||||||| |||||| ||||| |||
Sbjct 215008 ATAAGTCTCTGTTGGTCAGGTGGGATGCCCTCCTTGTCTTGAATCTTCGACTTGA-CGTT 214950
Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | || || || || || || | |||||||| ||||| |||| || || ||
Sbjct 214949 GTCGATAGTATCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGAC 214890
Query 46582 AA 46583
||
Sbjct 214889 AA 214888
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565226289767280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |