Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq861 111 2e-19
seq1406 105 7e-18
>seq861
Length=344942
Score = 111 bits (122), Expect = 2e-19
Identities = 136/183 (74%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACA-GCGTGCAAACGCTTAAA 38324
|||||||||| || |||||| |||| ||||| | | |||| | || || | | |||
Sbjct 25376 TCACGGGCAAGACTATCACCCTCGAGGTCGAATCGAGTGACACGATTGATAATG-TCAAA 25434
Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384
|| |||| ||||| |||||||||||| | || ||||| || || || | ||| |||
Sbjct 25435 TCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAACAACGCCTAATCTTCGCCGGC 25494
Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444
||||| || || |||| ||||||||| |||||||||||||| ||||| | || ||
Sbjct 25495 AAACAACTCGAAGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCAACCCTT 25554
Query 38445 CAT 38447
|||
Sbjct 25555 CAT 25557
>seq1406
Length=252419
Score = 105 bits (116), Expect = 7e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||||||||| || || ||||| || || || ||||| |||| || ||| | |
Sbjct 215106 ATGCAAATATTCGTCAAGACCCTCACCGGAAAGACGATCACTCTCGAGGTTGAGTCTTCA 215165
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | || || || | || || ||||| || || | ||||||
Sbjct 215166 GATACTATCGACAATGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTGACCAA 215225
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| ||||||| ||| ||||| || |||| || | || ||| | ||||||||||
Sbjct 215226 CAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTCCGACTACAAC 215285
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||||||||| | || || |||||||| || |||
Sbjct 215286 ATCCAAAAGGAGTCCACACTTCATTTGGTCCTTCGT 215321
Score = 89.7 bits (98), Expect = 5e-13
Identities = 151/216 (70%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || | |||||||| || || || | || || ||| | |
Sbjct 215334 ATGCAGATCTTCGTTAAGACTTTGACGGGCAAGACTATTACATTAGAAGTTGAGTCTTCG 215393
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || ||| |||| || || ||||| || || | || |||
Sbjct 215394 GACACCATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATCCCACCAGATCAA 215453
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | |||| ||| ||||| || |||| || | || || |||| ||| || |||
Sbjct 215454 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGTACACTCAGCGATTATAAC 215513
Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458
||||||||||| ||| || |||| |||||||| ||
Sbjct 215514 ATCCAAAAGGAGAGC-ACTTTGCACTTGGTGCTTCG 215548
Score = 82.4 bits (90), Expect = 8e-11
Identities = 135/192 (70%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326
|| ||||| ||||||||| |||| || ||| || | || | | | |||| | ||
Sbjct 214902 ACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGATACTATCGACAACG-TCAAGTC 214960
Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386
|| || | ||||| ||||| || || | ||||||||| | || || | || || ||
Sbjct 214961 GAAGATTCAAGACAAGGAGGGCATCCCACCTGACCAACAGAGACTTATCTTTGCTGGGAA 215020
Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446
|| || || |||| |||||||| |||||||| |||||||||||| | || || ||
Sbjct 215021 GCAACTTGAGGACGGCCGCACCCTTTCGGACTACAATATCCAAAAGGAATCTACTCTACA 215080
Query 38447 TTTGGTGCTGCG 38458
||||| || ||
Sbjct 215081 CTTGGTTCTCCG 215092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500162083797760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |