Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq861 111 2e-19 seq1406 105 7e-18 >seq861 Length=344942 Score = 111 bits (122), Expect = 2e-19 Identities = 136/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACA-GCGTGCAAACGCTTAAA 38324 |||||||||| || |||||| |||| ||||| | | |||| | || || | | ||| Sbjct 25376 TCACGGGCAAGACTATCACCCTCGAGGTCGAATCGAGTGACACGATTGATAATG-TCAAA 25434 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 || |||| ||||| |||||||||||| | || ||||| || || || | ||| ||| Sbjct 25435 TCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAACAACGCCTAATCTTCGCCGGC 25494 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 ||||| || || |||| ||||||||| |||||||||||||| ||||| | || || Sbjct 25495 AAACAACTCGAAGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCAACCCTT 25554 Query 38445 CAT 38447 ||| Sbjct 25555 CAT 25557 >seq1406 Length=252419 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||||||||| || || ||||| || || || ||||| |||| || ||| | | Sbjct 215106 ATGCAAATATTCGTCAAGACCCTCACCGGAAAGACGATCACTCTCGAGGTTGAGTCTTCA 215165 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || || || | || || ||||| || || | |||||| Sbjct 215166 GATACTATCGACAATGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTGACCAA 215225 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||||| ||| ||||| || |||| || | || ||| | |||||||||| Sbjct 215226 CAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTCCGACTACAAC 215285 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| | || || |||||||| || ||| Sbjct 215286 ATCCAAAAGGAGTCCACACTTCATTTGGTCCTTCGT 215321 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| || || || | || || ||| | | Sbjct 215334 ATGCAGATCTTCGTTAAGACTTTGACGGGCAAGACTATTACATTAGAAGTTGAGTCTTCG 215393 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || ||| |||| || || ||||| || || | || ||| Sbjct 215394 GACACCATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATCCCACCAGATCAA 215453 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| ||||| || |||| || | || || |||| ||| || ||| Sbjct 215454 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGTACACTCAGCGATTATAAC 215513 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||||| ||| || |||| |||||||| || Sbjct 215514 ATCCAAAAGGAGAGC-ACTTTGCACTTGGTGCTTCG 215548 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || ||||| ||||||||| |||| || ||| || | || | | | |||| | || Sbjct 214902 ACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGATACTATCGACAACG-TCAAGTC 214960 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || || | ||||| ||||| || || | ||||||||| | || || | || || || Sbjct 214961 GAAGATTCAAGACAAGGAGGGCATCCCACCTGACCAACAGAGACTTATCTTTGCTGGGAA 215020 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 || || || |||| |||||||| |||||||| |||||||||||| | || || || Sbjct 215021 GCAACTTGAGGACGGCCGCACCCTTTCGGACTACAATATCCAAAAGGAATCTACTCTACA 215080 Query 38447 TTTGGTGCTGCG 38458 ||||| || || Sbjct 215081 CTTGGTTCTCCG 215092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500162083797760