Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq962 127 2e-23
seq291 116 3e-20
>seq962
Length=65715
Score = 127 bits (140), Expect = 2e-23
Identities = 470/732 (64%), Gaps = 6/732 (1%)
Strand=Plus/Plus
Query 517985 TTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAAATCTTCACCTC 518042
||||||||||| ||| ||| | ||| | ||||| | || || ||||| ||||| |
Sbjct 59188 TTTCTCTTGAACTCTGAAACGAA--ATGGTTGACAAGTCTGTTGTCGAAATCCTCACCAC 59245
Query 518043 CCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAA 518102
|||| | ||||| |||| || | | |||| || | || || || | | ||| |
Sbjct 59246 CCAAGTGAGTATCACCTGCGGTGGACTTGACTTCAAAGATACCCTCCTCGATGGTCAAGA 59305
Query 518103 GAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTT 518162
| | ||||| ||||| ||||| | |||||| || || || || || ||
Sbjct 59306 GTGAGACATCGAAAGTTCCTCCACCAAGATCAAAGATGAGAACGTTTCGCTCACCCTCAA 59365
Query 518163 GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAA 518222
|| || || ||||| || |||| || || || || || || || || |||| | ||
Sbjct 59366 CCTTCTTGTCGAGACCGTATGCAATGGCGGCTGCGGTAGGCTCGTTGATGATTCGAAGAA 59425
Query 518223 CATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAAT 518282
| || |||||||| ||| || || || || |||||||| | |||||||||| |||| |
Sbjct 59426 CGTTGAGACCAGCGATTAAACCGGCGTCCTTGGTGGCTTGACGTTGTGAATCGGTAAAGT 59485
Query 518283 ATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTT 518342
|||| || || || | ||||| | | || | ||||| ||||| || || |
Sbjct 59486 ATGCTGGGACGGTGACGACGGCGTTGTTGACGGTTCCACCAAGGTAAGCCTCGGCGGTCT 59545
Query 518343 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTC-A 518401
| |||| || || ||||| || || |||| ||||| | ||||||| ||
Sbjct 59546 CTCTCATCTTGACCAAGATCATGGAAGAGATTTCCTCTGGTGTGAATTGCTTCTTCTCGC 59605
Query 518402 TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAG 518461
|||| | | || | | | || || |||| | | || | || || ||
Sbjct 59606 CCTTGAACTCAATCTCGACGACA-GGCTTTCCACCACGGTCGAGGACGGTGAAGGGAAAG 59664
Query 518462 TATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCA 518521
| |||||||| | || || ||||| || | | || || | || |||||
Sbjct 59665 TGCTTCATATCAGCCTGGACTTCCTGGTCTGCGAACTTACGTCCGATCAGACGCTTTGCG 59724
Query 518522 TCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGA 518581
|| || | || |||| || || || || |||| | || || |||||||| ||||||
Sbjct 59725 TCGAAGACTGTGTTGGCGGGGTTCATGGCGACTTGGTTCTTTGCGGCATCTCCGATCAGA 59784
Query 518582 TGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCA 518641
| || || ||||| || | ||| | || || || || || || || || || || ||
Sbjct 59785 CGCTCGGTATCTGTGAAGGCAACGAAGGAAGGGGTGGTTCGGTTTCCCTGGTCGTTGGCG 59844
Query 518642 ATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCA 518701
||||| |||| | | ||| | | | | ||||||||| | || ||||| | |||
Sbjct 59845 ATAATCTCAATTCGATCATCTCGATAGATACCTACACAGGAGTAGGTGGTTCCAAGATCG 59904
Query 518702 ATACCAATAGCA 518713
||||| || |||
Sbjct 59905 ATACCTATGGCA 59916
Score = 105 bits (116), Expect = 5e-17
Identities = 312/479 (65%), Gaps = 3/479 (1%)
Strand=Plus/Plus
Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333
|| || |||||||| | |||||| ||||| || ||||| ||||| || | | ||||||
Sbjct 58418 ATTCCGTTGGCATCGACATCAAAGGTGACCTCGATTTGTGGGACACCACGTGGTGCAGGT 58477
Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393
||||| || | | |||| | |||| | || || || || ||| || || |||
Sbjct 58478 GGGATACCAGTGAGCTCAAATTTACCCAAAAGGTTGTTGTCCTTGGTGCGTTGACGCTCA 58537
Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453
|||||||| | ||||||| || ||| ||| || || || | || | || ||| |
Sbjct 58538 CCCTCGAAGACTTGGATAAGCACACCAGGTTGGTTGTCGGAGAAGGTGGAGAAGACTTCG 58597
Query 517454 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513
|| || || || || || |||||||| || | |||||||| ||||| ||
Sbjct 58598 GACTTCTTGGTTGGGATGGTGGTGTTTCTTGGGATGAGCTTGGTCATTTGTCCACCAGCA 58657
Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 517571
|| || | ||| || || | || | |||||| | |||| || | || | | ||
Sbjct 58658 GTCTCGATACCGAGGGACAATGGCGCGACATCGAGGAGGAGGATCTCGTTGGTGGACTTG 58717
Query 517572 CATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630
| | || | || ||||| || || || | |||||||||||||||||||| ||
Sbjct 58718 GAAGAGGTGTCTCCGGAGAGAATGGCAGCCTGGACGGCAGCACCATATGCAACAGCCTCG 58777
Query 517631 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT 517690
||||| || | | | ||| | | || || ||||| ||| | || || | |
Sbjct 58778 TCAGGGTTGATGGACTTGTTTGGCTCCTTGCCGTTGAAGTAATCGGTAATGAGCTTTTGG 58837
Query 517691 ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 517749
| | || ||||||| || ||||| || | || || || || |||| ||||| ||
Sbjct 58838 ATTCTGGGGATACGAGTGGAACCTCCGACGAGGACGATCTCGTGAACCTTGGATTTGTC 58896
>seq291
Length=157447
Score = 116 bits (128), Expect = 3e-20
Identities = 109/139 (78%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227
|| ||||| || || |||| |||||||||||||| || |||| | ||||| ||| ||
Sbjct 22053 TTCTCAAGTCCGTATGCAAGCGCAGCAGCAGTTGGCTCGTTAACCACTCTCAGAACGTTG 21994
Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287
|| || |||||| || ||||| || |||||||| | |||||||||||| || ||||||
Sbjct 21993 AGTCCGGCAATTTGACCAGCATCCTTGGTGGCTTGACGTTGTGAATCGTTGAAGTATGCA 21934
Query 518288 GGAACAGTAATAACGGCAT 518306
|| || || | ||||||||
Sbjct 21933 GGGACTGTGACAACGGCAT 21915
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780737345674084
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |