Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq962 127 2e-23 seq291 116 3e-20 >seq962 Length=65715 Score = 127 bits (140), Expect = 2e-23 Identities = 470/732 (64%), Gaps = 6/732 (1%) Strand=Plus/Plus Query 517985 TTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAAATCTTCACCTC 518042 ||||||||||| ||| ||| | ||| | ||||| | || || ||||| ||||| | Sbjct 59188 TTTCTCTTGAACTCTGAAACGAA--ATGGTTGACAAGTCTGTTGTCGAAATCCTCACCAC 59245 Query 518043 CCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAA 518102 |||| | ||||| |||| || | | |||| || | || || || | | ||| | Sbjct 59246 CCAAGTGAGTATCACCTGCGGTGGACTTGACTTCAAAGATACCCTCCTCGATGGTCAAGA 59305 Query 518103 GAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTT 518162 | | ||||| ||||| ||||| | |||||| || || || || || || Sbjct 59306 GTGAGACATCGAAAGTTCCTCCACCAAGATCAAAGATGAGAACGTTTCGCTCACCCTCAA 59365 Query 518163 GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAA 518222 || || || ||||| || |||| || || || || || || || || |||| | || Sbjct 59366 CCTTCTTGTCGAGACCGTATGCAATGGCGGCTGCGGTAGGCTCGTTGATGATTCGAAGAA 59425 Query 518223 CATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAAT 518282 | || |||||||| ||| || || || || |||||||| | |||||||||| |||| | Sbjct 59426 CGTTGAGACCAGCGATTAAACCGGCGTCCTTGGTGGCTTGACGTTGTGAATCGGTAAAGT 59485 Query 518283 ATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTT 518342 |||| || || || | ||||| | | || | ||||| ||||| || || | Sbjct 59486 ATGCTGGGACGGTGACGACGGCGTTGTTGACGGTTCCACCAAGGTAAGCCTCGGCGGTCT 59545 Query 518343 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTC-A 518401 | |||| || || ||||| || || |||| ||||| | ||||||| || Sbjct 59546 CTCTCATCTTGACCAAGATCATGGAAGAGATTTCCTCTGGTGTGAATTGCTTCTTCTCGC 59605 Query 518402 TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAG 518461 |||| | | || | | | || || |||| | | || | || || || Sbjct 59606 CCTTGAACTCAATCTCGACGACA-GGCTTTCCACCACGGTCGAGGACGGTGAAGGGAAAG 59664 Query 518462 TATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCA 518521 | |||||||| | || || ||||| || | | || || | || ||||| Sbjct 59665 TGCTTCATATCAGCCTGGACTTCCTGGTCTGCGAACTTACGTCCGATCAGACGCTTTGCG 59724 Query 518522 TCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGA 518581 || || | || |||| || || || || |||| | || || |||||||| |||||| Sbjct 59725 TCGAAGACTGTGTTGGCGGGGTTCATGGCGACTTGGTTCTTTGCGGCATCTCCGATCAGA 59784 Query 518582 TGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCA 518641 | || || ||||| || | ||| | || || || || || || || || || || || Sbjct 59785 CGCTCGGTATCTGTGAAGGCAACGAAGGAAGGGGTGGTTCGGTTTCCCTGGTCGTTGGCG 59844 Query 518642 ATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCA 518701 ||||| |||| | | ||| | | | | ||||||||| | || ||||| | ||| Sbjct 59845 ATAATCTCAATTCGATCATCTCGATAGATACCTACACAGGAGTAGGTGGTTCCAAGATCG 59904 Query 518702 ATACCAATAGCA 518713 ||||| || ||| Sbjct 59905 ATACCTATGGCA 59916 Score = 105 bits (116), Expect = 5e-17 Identities = 312/479 (65%), Gaps = 3/479 (1%) Strand=Plus/Plus Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 || || |||||||| | |||||| ||||| || ||||| ||||| || | | |||||| Sbjct 58418 ATTCCGTTGGCATCGACATCAAAGGTGACCTCGATTTGTGGGACACCACGTGGTGCAGGT 58477 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 ||||| || | | |||| | |||| | || || || || ||| || || ||| Sbjct 58478 GGGATACCAGTGAGCTCAAATTTACCCAAAAGGTTGTTGTCCTTGGTGCGTTGACGCTCA 58537 Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453 |||||||| | ||||||| || ||| ||| || || || | || | || ||| | Sbjct 58538 CCCTCGAAGACTTGGATAAGCACACCAGGTTGGTTGTCGGAGAAGGTGGAGAAGACTTCG 58597 Query 517454 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513 || || || || || || |||||||| || | |||||||| ||||| || Sbjct 58598 GACTTCTTGGTTGGGATGGTGGTGTTTCTTGGGATGAGCTTGGTCATTTGTCCACCAGCA 58657 Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 517571 || || | ||| || || | || | |||||| | |||| || | || | | || Sbjct 58658 GTCTCGATACCGAGGGACAATGGCGCGACATCGAGGAGGAGGATCTCGTTGGTGGACTTG 58717 Query 517572 CATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630 | | || | || ||||| || || || | |||||||||||||||||||| || Sbjct 58718 GAAGAGGTGTCTCCGGAGAGAATGGCAGCCTGGACGGCAGCACCATATGCAACAGCCTCG 58777 Query 517631 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT 517690 ||||| || | | | ||| | | || || ||||| ||| | || || | | Sbjct 58778 TCAGGGTTGATGGACTTGTTTGGCTCCTTGCCGTTGAAGTAATCGGTAATGAGCTTTTGG 58837 Query 517691 ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 517749 | | || ||||||| || ||||| || | || || || || |||| ||||| || Sbjct 58838 ATTCTGGGGATACGAGTGGAACCTCCGACGAGGACGATCTCGTGAACCTTGGATTTGTC 58896 >seq291 Length=157447 Score = 116 bits (128), Expect = 3e-20 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || ||||| || || |||| |||||||||||||| || |||| | ||||| ||| || Sbjct 22053 TTCTCAAGTCCGTATGCAAGCGCAGCAGCAGTTGGCTCGTTAACCACTCTCAGAACGTTG 21994 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 || || |||||| || ||||| || |||||||| | |||||||||||| || |||||| Sbjct 21993 AGTCCGGCAATTTGACCAGCATCCTTGGTGGCTTGACGTTGTGAATCGTTGAAGTATGCA 21934 Query 518288 GGAACAGTAATAACGGCAT 518306 || || || | |||||||| Sbjct 21933 GGGACTGTGACAACGGCAT 21915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780737345674084