Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq962 293 3e-74 seq938 167 3e-36 seq843 123 3e-23 seq291 82.4 1e-10 >seq962 Length=65715 Score = 293 bits (324), Expect = 3e-74 Identities = 482/692 (70%), Gaps = 6/692 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||||||||| ||||| || ||||| | ||||||||||||||||| Sbjct 59230 TCGAAATCCTCACCACCCAAGTGAGTATCACCTGCGGTGGACTTGACTTCAAAGATACCC 59289 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | || | || ||||| || || || ||||| || ||||| ||||| ||| Sbjct 59290 TCCTCGATGGTCAAGAGTGAGACATCGAAAGTTCCTCCACCAAGATCAAAGATGAGAACG 59349 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || | || ||||| ||||||||||| || || || || || || || || Sbjct 59350 TTTCGCTCACCCTCAACCTTCTTGTCGAGACCGTATGCAATGGCGGCTGCGGTAGGCTCG 59409 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || || |||||| ||| || ||||| || | || || || || ||||| ||| Sbjct 59410 TTGATGATTCGAAGAACGTTGAGACCAGCGATTAAACCGGCGTCCTTGGTGGCTTGACGT 59469 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || |||||| ||||||| || ||||| || ||||| |||| |||| | ||| || Sbjct 59470 TGTGAATCGGTAAAGTATGCTGGGACGGTGACGACGGCGTTGTTGACGGTTCCACCAAGG 59529 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || ||| | ||| |||| ||| | | ||| || || || || || | | Sbjct 59530 TAAGCCTCGGCGGTCTCTCTCATCTTGACCAAGATCATGGAAGAGATTTCCTCTGGTGTG 59589 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876 || || ||| | || || || || |||| || | | || || || || ||| | | Sbjct 59590 AATTGCTTCTTCTCGCCCTTGAACTCAATCTCGACGACAGGCTT-TC--CACCACGGTCG 59646 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 | || | | | | | |||||||| | ||||| | ||||| | ||||| | | Sbjct 59647 AGGACGGTGAAGGGAAAGTGCTTCATATCAGCCTGGACTTCCTGGTCTGCGAACTTACGT 59706 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 ||||| ||||||||||| || || |||||||| |||||||||||| ||||||||| Sbjct 59707 CCGATCAGACGCTTTGCGTCGAAGACTGTGTTGGCGGGGTTCATGGCGACTTGGTTCTTT 59766 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || ||||| ||||| || || || || || || ||| | || ||||| ||| Sbjct 59767 GCGGCATCTCCGATCAGACGCTCGGTA---TCTGTGAAGGCAACGAAGGAAGGGGTGGTT 59823 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116 || || || |||||||| || ||||| || | || || | | | ||| || || || Sbjct 59824 CGGTTTCCCTGGTCGTTGGCGATAATCTCAATTCGATCATCTCGATAGATACCTACACAG 59883 Query 8117 GAATACGTTGTTCCTAAATCAATACCGATTGC 8148 || || || ||||| | ||| ||||| || || Sbjct 59884 GAGTAGGTGGTTCCAAGATCGATACCTATGGC 59915 >seq938 Length=599849 Score = 167 bits (184), Expect = 3e-36 Identities = 350/516 (68%), Gaps = 17/516 (3%) Strand=Plus/Plus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| ||||| ||||||||||| | | ||| || | || ||| | || |||||| Sbjct 176038 TCCTCGAAACGAGCACGGGTAATTTGAGCGTTGAAGTCTTCTCCATCGAACAAAGAATCA 176097 Query 7307 ATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCG 7364 || |||| || ||||| || ||| | | | | |||| ||| || ||||| || || | Sbjct 176098 ATCTCAACAGTGGTTTGGGCACCGTTGGAAAGA--GTTCTCTTAGCACGCTCGCAAGCAG 176155 Query 7365 TTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAA 7424 | || | ||| || || ||||| | | |||||| | ||| ||||| || | | | | Sbjct 176156 TACGAAGACGTCGTAGAGCACGGGCATCACCGGACAAATCCTTCTTGGTCTTTCTTGTGA 176215 Query 7425 ACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTA 7483 | || | |||||| |||| ||| | | ||||||||||| ||| ||||| || ||| Sbjct 176216 ATTCCTTCTTGAAGTGATCGAGCAAGT-TGGTATCGAAATCTTGACCTCCCAAATGGGTA 176274 Query 7484 TCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCA 7543 || || || || || ||||| || | ||| || | ||||| | | || ||||| Sbjct 176275 TCACCAGCAGTGGCCTTGACGGTGAAAACACCACCCTGGATGTTGAGAAGGGAGACATCG 176334 Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG-TCGTCTTTGTTCTT--- 7599 || || || ||||| || || | || | || || ||| || | ||| ||| Sbjct 176335 AAAGTTCCTCCACCGAGATCGTAGATCAAGACATT----TCGCTCCTTGTTGGACTTTCC 176390 Query 7600 ---ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656 | |||||||||| |||||||| || || ||||| || || || || || ||| ||| Sbjct 176391 GGCACCGAGACCGTATGCGATAGCAGCGGCAGTTGGCTCGTTGATGATTCGGAGAACGTT 176450 Query 7657 CAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716 || || ||||| | | ||||| || || ||||| || || ||||| |||||||| Sbjct 176451 AAGACCGGCAATGGCACCTGCATCCTTGGTGGCTTGACGCTGGTTGTCGTTGAAGTAGGC 176510 Query 7717 CGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 ||||| || | |||||| | | || ||||| || Sbjct 176511 TGGGACAGTGATGACCGCCTTGGCAACCTTCTTGCC 176546 >seq843 Length=104768 Score = 123 bits (136), Expect = 3e-23 Identities = 458/708 (65%), Gaps = 25/708 (4%) Strand=Plus/Minus Query 105284 ACTCCAGAATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCG 105343 |||| | ||||| || ||||| || || | || ||||| | | || ||||| Sbjct 63982 ACTCGACGATTTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTGC 63923 Query 105344 ACTTTTCATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATT 105403 |||| || || || || ||||||||||| | ||| |||| || ||| |||| | | Sbjct 63922 TCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCT 63863 Query 105404 TAATAATTGCTTTCCAAATCTCCGAAGCTGGTACAACTTTAGTTGCGA----TACCTTCA 105459 || || | | ||||| || ||| | || | ||||| | || ||| Sbjct 63862 CAAGGATAGAGTACCAAAGCTTTTGGGCTTTGATG-CTCT---TGCGACCCTTGCCCTCA 63807 Query 105460 GATTCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTT 105519 || ||||||||||| || | |||| ||||| | |||||| || || | | ||| Sbjct 63806 GACTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACCAGGA 63747 Query 105520 GCCTGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAA 105579 || | ||| || | ||||| ||| | || |||||| || |||||||| | | Sbjct 63746 CACTCGTTAGGGCACATCAATGTCCAGTCGAGATTCTTTTCAACACGCTTCATGAAGAGA 63687 Query 105580 TCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTC 105639 ||||||||||| | || | ||||| || || | |||| || | || || ||| Sbjct 63686 TCTGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCATGGTTC 63627 Query 105640 AAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATA 105699 || | ||||| || |||| || ||||||||||||||| || | |||| || | | Sbjct 63626 TTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAA 63567 Query 105700 GACCCTTTACGACGC------CCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACT 105753 | || | ||||| || |||||| |||||||| ||||| ||| | ||| Sbjct 63566 GCACC---AGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTGAAAACT 63510 Query 105754 CGTAACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTT 105813 | | ||| |||| || || | ||| |||| || || || |||| | | Sbjct 63509 CTGAGCATAGGAACGATTCCGTTGGAGTTTCCGTTAGTACCGGCGATATAAGCGCCGGTC 63450 Query 105814 GCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTT---ACTGATACGCGCA 105870 ||||| | |||||| | | || ||||| ||||| ||| | | || ||||| Sbjct 63449 GCACGGATTCTGTGAACATTGAGACCGATACCACCAGCATTCTTTGAAATCAT-GGCGCA 63391 Query 105871 CACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAA 105930 | ||||| || || ||||||||||| || || || || ||||| | | || ||||| Sbjct 63390 -AATCTTTAAC-GTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAG 63333 Query 105931 CACGATGACATTTGTGGTCTG-GGTGTACCAGCATTGAACAGAGTTGG 105977 || ||||| | |||| | ||| ||||| ||||| ||| || ||||| Sbjct 63332 CAGGATGAAAGTTGT-GCCTGTGGTGTGCCAGCTGCGAAGAGGGTTGG 63286 >seq291 Length=157447 Score = 82.4 bits (90), Expect = 1e-10 Identities = 192/283 (68%), Gaps = 14/283 (5%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| |||||||||||||| || || || ||| | ||||| || || | || Sbjct 22189 ATCGAAATCCTCACCACCCAAGTGAGTGTCTCCGTTGGTGGACTTGACCTCGAACACAC- 22131 Query 7516 TCCTTC--AATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573 ||||| || | | | || | ||| || || || ||||||| || | || | Sbjct 22130 -CCTTCTGGATCTCGAGAACGGAGATATCGAAGGTTCCTCCACCCAAATCGTA---GACT 22075 Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 || | ||| | ||| | | ||| || || ||||| || | || || || ||||| Sbjct 22074 GCGAT--GATC-TTGTCCTCATCCTTCTCAAGTCCGTATGCAAGCGCAGCAGCAGTTGGC 22018 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCTT 7691 || |||| | | ||| ||| || || ||||| ||| | ||||| || || |||| Sbjct 22017 TCGTTAACCACTCTCAGAACGTTGAGTCCGGCAAT--TTGACCAGCATCCTTGGTGGCTT 21960 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGC 7734 | ||||| |||||||| ||||| || ||||| || || || || Sbjct 21959 GACGTTGTGAATCGTTGAAGTATGCAGGGACTGTGACAACGGC 21917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635119192279760