Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq843 289 4e-73
seq908 113 6e-20
seq927 105 8e-18
seq567 82.4 9e-11
>seq843
Length=104768
Score = 289 bits (320), Expect = 4e-73
Identities = 1182/1834 (64%), Gaps = 73/1834 (4%)
Strand=Plus/Plus
Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATG 111605
|| || ||| |||||||||||||| | || |||| | || ||||| | |||
Sbjct 63112 TACTTCGGTTTCAAGACCCTCGAGCGATCATATCTCCTCCGCCTCGATGG---CAAGATC 63168
Query 111606 ---GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATT 111662
||| |||||| | ||| | ||||| || ||| |||| || || || || |||||
Sbjct 63169 TGCGAACGTCCACAGCATATGATTATGCGTGTTGCGGTCGGAATTCACGGTGAGGATATC 63228
Query 111663 GATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCA 111722
|| ||| | ||||| ||| || ||||||| | |||| |||||| | |||
Sbjct 63229 GAGGCTGCCATCGAGACCTACAACTTGATGTCCAGCAAATACTTCACCCACGCCTCCCCA 63288
Query 111723 ACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAAC 111782
||||||||| ||||| |||||| | ||| | || || |||||||| | |
Sbjct 63289 ACCCTCTTCGCAGCTGGCACACCACAGGCACAACTTTCATCCTGCTTCCTTATCGACATG 63348
Query 111783 AAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAG 111842
|||||||| || |||| ||||||| ||| | | || ||| || ||||||
Sbjct 63349 AAGGAGGACAGCATTGATGGTATTTACGACACGTTAAAGATTTGCGCCATGATTTCAAAG 63408
Query 111843 TGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGA 111902
|||||||||||||| | | | || || | || | | || |||
Sbjct 63409 AATGCTGGTGGTATCGGTCTCAATGTTCACAGAATCCGTGCGACCGGCGCTTATATCGCC 63468
Query 111903 GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962
||||| || || | || | || || |||| ||||| | || || ||| ||| ||
Sbjct 63469 GGTACTAACGGAAACTCCAACGGAATCGTTCCTATGCTCAGAGTTTTCAACAACACCGCC 63528
Query 111963 CGCTATGTAAACCAAGCTGGGCGTCGCAAG------GGATCTATCGCAGTCTATCTTGAG 112016
| ||||| | |||| ||| | |||| || || |||| |||| ||||||
Sbjct 63529 AGATATGTTGATCAAGGTGG---TAACAAGCGTCCTGGTGCTTTCGCCATCTACCTTGAG 63585
Query 112017 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAG 112076
||||||||||| ||| | | |||||||| || | || ||||| || | ||||||
Sbjct 63586 CCATGGCACGCCGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCATGGAAAGGAGGAG 63645
Query 112077 GCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTT 112136
| || ||| |||||||||| ||||||||||||||||||||||||||||||| | |||
Sbjct 63646 GTTCGTGCCCGTGATCTCTTCTACGCTCTCTGGATTCCAGATCTCTTCATGAAGCGTGTT 63705
Query 112137 GAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCC 112196
|| ||| | | | ||| | | | || || || || || ||| | |||||| |
Sbjct 63706 GAAAAGAATCTCGACTGGACATTGATGTGCCCTAACGAGTGTCCTGGTTTGGCCGATGTC 63765
Query 112197 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTG-C 112255
||||| ||||| ||||| | || || |||||| || |||| | | |
Sbjct 63766 TACGGTGACGAGTTCGAAGCGTTGTATGAGAAATACGAGTCTGA-----GGGCAAGGGTC 63820
Query 112256 GACGGTGC----CAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 112311
| | || ||| | | ||| | |||| || || ||||||| ||||| |
Sbjct 63821 GCAAGAGCATCAAAGCCCAAAAGCTTTGGTACTCTATCCTTGAGGCTCAAACTGAGACCG 63880
Query 112312 GTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 112371
| | || | ||||||||||| || || || |||| |||||| || ||||||||| | |
Sbjct 63881 GAAACCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGCAACCAAAAGAATCTCG 63940
Query 112372 GTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAG-ACA-AAGATGA 112429
|| ||| || |||||| | || || |||||| | || ||| | || ||||||
Sbjct 63941 GTACCATCCGAAGCTCCAACTTGTGCACTGAAATCGTCGA--GTACTGTGCACCAGATGA 63998
Query 112430 GACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAA 112489
| ||||| || || | ||||| | |||||||| | ||||| ||| ||||
Sbjct 63999 GGTCGCTGTTTGCAATTTGGCATCGCTTGCTCTCCCAACCTATGTTGATGAGAAGACCGC 64058
Query 112490 GACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAG 112549
|| | ||| | |||| || ||||| || || |||| || ||| | || |
Sbjct 64059 CACTTATGACTTCCAAAAGCTTCACGAGGTCTGCCAAGTTGTCGTCAAGAACTTGAATAA 64118
Query 112550 AGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACA 112606
|||| ||| || | ||||| || |||| || | || ||| | | ||
Sbjct 64119 GATTATCGATGTCAACTACTACCCGGTTCCTGAG---GCAAGAAAGAGCAATTTCCGTCA 64175
Query 112607 CCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCA 112663
| | || |||| ||||||||| |||||||| || |||| ||| | |||| ||| |
Sbjct 64176 CAGACCTATTGCTCTCGGTGTTCAAGGTCTTGCTGATGCCTTCTTGGCTCTTCGTCTTC- 64234
Query 112664 CGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCA 112723
| || || ||| || || ||| | |||| | || || ||||| || || ||
Sbjct 64235 --CTTTCGAATCCCCGGAGGCCAAGCACCTCAACATCCAAATTTTCGAGACCATTTACCA 64292
Query 112724 CGCCGCTCTTGAGGCGAGTTC---GGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTT 112780
||| ||| |||| | ||| |||||||||| || || ||||||||||||| || |
Sbjct 64293 CGCTGCT-TTGA--CTGCTTCCATGGAGTTGGCAAAGATTCATGGTCCATATGAGACTTA 64349
Query 112781 TGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAA 112840
| | || || || || || | || | ||| |||| ||| ||||||| || | ||| |
Sbjct 64350 TCAAGGCTCGCCTGCCTCTAAGGGCGAGCTCCAATATGACATGTGGG-GTGTCACACCTA 64408
Query 112841 GC-TTCACTACGACTGGG-ACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAAC 112898
| || | || |||| ||| | ||| ||| ||| | | ||| | ||||||
Sbjct 64409 CCGATCTTTGGGATTGGGCTAGCT-TGAAGCAACAGATCTCTCAACACGGTATCCGTAAC 64467
Query 112899 AGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAATGA 112957
||| | | | || || |||||||||||| ||| |||| |||||| | ||| ||
Sbjct 64468 AGTTTGCTCGTCGCTCCTATGCCAACAGCCAGTACCAGTCAAATTCTTGGAT-TTAACGA 64526
Query 112958 ATGCTTTGAACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTG 113016
||||| || || || || | |||||||| ||| || | ||| || ||||| ||
Sbjct 64527 GTGCTTCGAGCCATATACCTCCAACATCTACTCT-CGACGTGTCCTTGCTGGAGAATTCC 64585
Query 113017 TGATTGTCAAC---AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGG 113073
|||||||| || |||| |||| ||| || || || || |||||| |
Sbjct 64586 AAGTTGTCAACCCATGGCTTCTCAAGGAT---CTCGTCGATATGGGACTTTGGTCCGACA 64642
Query 113074 ATATGAAGGA---TCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATT 113129
| |||||| | | ||| || ||| ||||| || || |||||| || | ||
Sbjct 64643 ACATGAAGAACCGTATCATTGCTGA----TGGTGGATCAATCCAAAATGTTCCAAACATC 64698
Query 113130 CCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAG--ATGAAGGATGTCA 113187
|| | ||| || ||| | ||| || |||||||| ||| | | | | | ||
Sbjct 64699 CCGGCTGATATCAAGGCTCTTTACAAGACCGTTTGGGAGATCTCGCAACGTACCA--TCG 64756
Query 113188 TTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCA 113247
| | ||||| || || |||||| |||||||||||| |||| ||||| | ||
Sbjct 64757 TCCAGATGGCTGCCGACCGTGGTGCATTCATTGATCAATCTCAATCAATGAACATCCACA 64816
Query 113248 TGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTC 113307
|| | ||||| ||| ||| || | |||||| | | |||||| |||||
Sbjct 64817 TGAAGGACCCAACCATGGGTAAGATCACCAGTATGCATTTCGCAGGCTGGAAGCTGGGTC 64876
Query 113308 TCAAAACGGGGATGTATTACCTCCGATCTAAGGC 113341
|||| || || ||||| || ||||| ||| |||
Sbjct 64877 TCAAGACTGGAATGTACTATCTCCGTACTATGGC 64910
>seq908
Length=77775
Score = 113 bits (124), Expect = 6e-20
Identities = 155/214 (72%), Gaps = 6/214 (3%)
Strand=Plus/Plus
Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGTC 102166
|||||| || ||| | ||||| || ||||||||| | ||| | | |||| ||||
Sbjct 45075 AGTTCCCTGCATTAAGAAGAAGGCTGATTGGGCTGTCCGATGGATCCAAGACAAGGAGTC 45134
Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226
||||||| | || || | || || || ||||||||||||||||||| |||
Sbjct 45135 CA---CCTTTGCCCAACGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGG 45191
Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286
||| ||| | | || | ||| | ||||| || || |||||| | ||||| ||||||
Sbjct 45192 TTCTTTCGCCTCCATCTTCTGGTTGAAGAAACGTGGCCTCATGGCTGGTCTTACCTTCTC 45251
Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320
||||||||| ||||| ||||| ||||| ||||||
Sbjct 45252 CAACGAGCTGATCTCCCGTGATGAGGGTCTCCAC 45285
>seq927
Length=373674
Score = 105 bits (116), Expect = 8e-18
Identities = 274/411 (67%), Gaps = 20/411 (5%)
Strand=Plus/Plus
Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG 16032
|||||||||||||| || |||| ||| || | ||| ||| ||||||||||| | |
Sbjct 175729 AAACCATCCATCTCGGTTAAAATCTGATTGAGAGTGGCTTCTCGTTCATCATTTCCACCA 175788
Query 16033 GCATACCA-CCAGC---ACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088
|| | | ||||| || || |||||| | ||||||||||| ||||||||||
Sbjct 175789 CCAAATGAACCAGCTTTACCACGAGCCTTTCCGATTGCATCAATCTCGTCAATGAAGATA 175848
Query 16089 ATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 16148
|| || || ||| | | || | | |||||||| || || | || || |||
Sbjct 175849 ATACAAGGGGTATTCTTTCTGGCCATCGCGAAGAGATCTCGAACTCTGGAAGCACCAACA 175908
Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAA-CATTG-----GATGAAGGGGACATTA 16202
|| ||||||||||||||||| | ||||| || || || ||| || |||
Sbjct 175909 CCGACAAACATCTCCACAAACT------CGGAACCACTGACGCTGAAGAAAGGTACACCC 175962
Query 16203 GATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGG 16262
||||| || || |||| || || | ||||||||| ||||| || ||| | |||
Sbjct 175963 GATTCTCCGGCTGTGGCCTTTGCTAGTAAAGTCTTACCGGTACCAGGTGGACCAGAAAGG 176022
Query 16263 AGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAA 16322
| ||| ||||| || ||||| || || || | || ||||||| ||| |||||
Sbjct 176023 ATGGCTCCTCGAGGGATCTTAGCACCCAATCTTTCGAATTGCTCAGGTGTCTTTAGAAAT 176082
Query 16323 TCCAC-AATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372
|| ||| | | | |||| ||||| |||| || ||| |||||||
Sbjct 176083 GAAACGAATTCCATAATCTCCATC-TTGGCTTCGTCCATACCCGCAACATC 176132
>seq567
Length=145468
Score = 82.4 bits (90), Expect = 9e-11
Identities = 103/139 (74%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 163600 TGGTGCGGGTGTTATTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTCTTCAATCA 163659
||| || ||||| |||||| | |||||| || ||||||||||| | |||||||||||
Sbjct 88607 TGGCGCAGGTGTAATTGATGCTGACTACCGTGGCCAAGTCAAAGTCCTCCTCTTCAATCA 88666
Query 163660 TGGAGACAAAGACTTTGAGGTAAAGAGGGGGGAGCGCATCGCACAACTTGTTCTT-GAGA 163718
|| || ||||| || ||||| ||| ||| || || | || ||| ||| |||| ||||
Sbjct 88667 CGGCGAGAAAGATTTCGAGGTCAAGGAGGGAGATCGTGTAGCTCAA-TTGGTCTTGGAGA 88725
Query 163719 GGTGTGAGACACCCGATGT 163737
| | |||||||| ||
Sbjct 88726 GAATCTACACACCCGAGGT 88744
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620729100594080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |