Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq843 289 4e-73 seq908 113 6e-20 seq927 105 8e-18 seq567 82.4 9e-11 >seq843 Length=104768 Score = 289 bits (320), Expect = 4e-73 Identities = 1182/1834 (64%), Gaps = 73/1834 (4%) Strand=Plus/Plus Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATG 111605 || || ||| |||||||||||||| | || |||| | || ||||| | ||| Sbjct 63112 TACTTCGGTTTCAAGACCCTCGAGCGATCATATCTCCTCCGCCTCGATGG---CAAGATC 63168 Query 111606 ---GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATT 111662 ||| |||||| | ||| | ||||| || ||| |||| || || || || ||||| Sbjct 63169 TGCGAACGTCCACAGCATATGATTATGCGTGTTGCGGTCGGAATTCACGGTGAGGATATC 63228 Query 111663 GATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCA 111722 || ||| | ||||| ||| || ||||||| | |||| |||||| | ||| Sbjct 63229 GAGGCTGCCATCGAGACCTACAACTTGATGTCCAGCAAATACTTCACCCACGCCTCCCCA 63288 Query 111723 ACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAAC 111782 ||||||||| ||||| |||||| | ||| | || || |||||||| | | Sbjct 63289 ACCCTCTTCGCAGCTGGCACACCACAGGCACAACTTTCATCCTGCTTCCTTATCGACATG 63348 Query 111783 AAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAG 111842 |||||||| || |||| ||||||| ||| | | || ||| || |||||| Sbjct 63349 AAGGAGGACAGCATTGATGGTATTTACGACACGTTAAAGATTTGCGCCATGATTTCAAAG 63408 Query 111843 TGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGA 111902 |||||||||||||| | | | || || | || | | || ||| Sbjct 63409 AATGCTGGTGGTATCGGTCTCAATGTTCACAGAATCCGTGCGACCGGCGCTTATATCGCC 63468 Query 111903 GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962 ||||| || || | || | || || |||| ||||| | || || ||| ||| || Sbjct 63469 GGTACTAACGGAAACTCCAACGGAATCGTTCCTATGCTCAGAGTTTTCAACAACACCGCC 63528 Query 111963 CGCTATGTAAACCAAGCTGGGCGTCGCAAG------GGATCTATCGCAGTCTATCTTGAG 112016 | ||||| | |||| ||| | |||| || || |||| |||| |||||| Sbjct 63529 AGATATGTTGATCAAGGTGG---TAACAAGCGTCCTGGTGCTTTCGCCATCTACCTTGAG 63585 Query 112017 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAG 112076 ||||||||||| ||| | | |||||||| || | || ||||| || | |||||| Sbjct 63586 CCATGGCACGCCGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCATGGAAAGGAGGAG 63645 Query 112077 GCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTT 112136 | || ||| |||||||||| ||||||||||||||||||||||||||||||| | ||| Sbjct 63646 GTTCGTGCCCGTGATCTCTTCTACGCTCTCTGGATTCCAGATCTCTTCATGAAGCGTGTT 63705 Query 112137 GAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCC 112196 || ||| | | | ||| | | | || || || || || ||| | |||||| | Sbjct 63706 GAAAAGAATCTCGACTGGACATTGATGTGCCCTAACGAGTGTCCTGGTTTGGCCGATGTC 63765 Query 112197 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTG-C 112255 ||||| ||||| ||||| | || || |||||| || |||| | | | Sbjct 63766 TACGGTGACGAGTTCGAAGCGTTGTATGAGAAATACGAGTCTGA-----GGGCAAGGGTC 63820 Query 112256 GACGGTGC----CAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 112311 | | || ||| | | ||| | |||| || || ||||||| ||||| | Sbjct 63821 GCAAGAGCATCAAAGCCCAAAAGCTTTGGTACTCTATCCTTGAGGCTCAAACTGAGACCG 63880 Query 112312 GTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 112371 | | || | ||||||||||| || || || |||| |||||| || ||||||||| | | Sbjct 63881 GAAACCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGCAACCAAAAGAATCTCG 63940 Query 112372 GTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAG-ACA-AAGATGA 112429 || ||| || |||||| | || || |||||| | || ||| | || |||||| Sbjct 63941 GTACCATCCGAAGCTCCAACTTGTGCACTGAAATCGTCGA--GTACTGTGCACCAGATGA 63998 Query 112430 GACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAA 112489 | ||||| || || | ||||| | |||||||| | ||||| ||| |||| Sbjct 63999 GGTCGCTGTTTGCAATTTGGCATCGCTTGCTCTCCCAACCTATGTTGATGAGAAGACCGC 64058 Query 112490 GACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAG 112549 || | ||| | |||| || ||||| || || |||| || ||| | || | Sbjct 64059 CACTTATGACTTCCAAAAGCTTCACGAGGTCTGCCAAGTTGTCGTCAAGAACTTGAATAA 64118 Query 112550 AGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACA 112606 |||| ||| || | ||||| || |||| || | || ||| | | || Sbjct 64119 GATTATCGATGTCAACTACTACCCGGTTCCTGAG---GCAAGAAAGAGCAATTTCCGTCA 64175 Query 112607 CCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCA 112663 | | || |||| ||||||||| |||||||| || |||| ||| | |||| ||| | Sbjct 64176 CAGACCTATTGCTCTCGGTGTTCAAGGTCTTGCTGATGCCTTCTTGGCTCTTCGTCTTC- 64234 Query 112664 CGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCA 112723 | || || ||| || || ||| | |||| | || || ||||| || || || Sbjct 64235 --CTTTCGAATCCCCGGAGGCCAAGCACCTCAACATCCAAATTTTCGAGACCATTTACCA 64292 Query 112724 CGCCGCTCTTGAGGCGAGTTC---GGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTT 112780 ||| ||| |||| | ||| |||||||||| || || ||||||||||||| || | Sbjct 64293 CGCTGCT-TTGA--CTGCTTCCATGGAGTTGGCAAAGATTCATGGTCCATATGAGACTTA 64349 Query 112781 TGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAA 112840 | | || || || || || | || | ||| |||| ||| ||||||| || | ||| | Sbjct 64350 TCAAGGCTCGCCTGCCTCTAAGGGCGAGCTCCAATATGACATGTGGG-GTGTCACACCTA 64408 Query 112841 GC-TTCACTACGACTGGG-ACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAAC 112898 | || | || |||| ||| | ||| ||| ||| | | ||| | |||||| Sbjct 64409 CCGATCTTTGGGATTGGGCTAGCT-TGAAGCAACAGATCTCTCAACACGGTATCCGTAAC 64467 Query 112899 AGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAATGA 112957 ||| | | | || || |||||||||||| ||| |||| |||||| | ||| || Sbjct 64468 AGTTTGCTCGTCGCTCCTATGCCAACAGCCAGTACCAGTCAAATTCTTGGAT-TTAACGA 64526 Query 112958 ATGCTTTGAACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTG 113016 ||||| || || || || | |||||||| ||| || | ||| || ||||| || Sbjct 64527 GTGCTTCGAGCCATATACCTCCAACATCTACTCT-CGACGTGTCCTTGCTGGAGAATTCC 64585 Query 113017 TGATTGTCAAC---AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGG 113073 |||||||| || |||| |||| ||| || || || || |||||| | Sbjct 64586 AAGTTGTCAACCCATGGCTTCTCAAGGAT---CTCGTCGATATGGGACTTTGGTCCGACA 64642 Query 113074 ATATGAAGGA---TCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATT 113129 | |||||| | | ||| || ||| ||||| || || |||||| || | || Sbjct 64643 ACATGAAGAACCGTATCATTGCTGA----TGGTGGATCAATCCAAAATGTTCCAAACATC 64698 Query 113130 CCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAG--ATGAAGGATGTCA 113187 || | ||| || ||| | ||| || |||||||| ||| | | | | | || Sbjct 64699 CCGGCTGATATCAAGGCTCTTTACAAGACCGTTTGGGAGATCTCGCAACGTACCA--TCG 64756 Query 113188 TTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCA 113247 | | ||||| || || |||||| |||||||||||| |||| ||||| | || Sbjct 64757 TCCAGATGGCTGCCGACCGTGGTGCATTCATTGATCAATCTCAATCAATGAACATCCACA 64816 Query 113248 TGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTC 113307 || | ||||| ||| ||| || | |||||| | | |||||| ||||| Sbjct 64817 TGAAGGACCCAACCATGGGTAAGATCACCAGTATGCATTTCGCAGGCTGGAAGCTGGGTC 64876 Query 113308 TCAAAACGGGGATGTATTACCTCCGATCTAAGGC 113341 |||| || || ||||| || ||||| ||| ||| Sbjct 64877 TCAAGACTGGAATGTACTATCTCCGTACTATGGC 64910 >seq908 Length=77775 Score = 113 bits (124), Expect = 6e-20 Identities = 155/214 (72%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGTC 102166 |||||| || ||| | ||||| || ||||||||| | ||| | | |||| |||| Sbjct 45075 AGTTCCCTGCATTAAGAAGAAGGCTGATTGGGCTGTCCGATGGATCCAAGACAAGGAGTC 45134 Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 ||||||| | || || | || || || ||||||||||||||||||| ||| Sbjct 45135 CA---CCTTTGCCCAACGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGG 45191 Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286 ||| ||| | | || | ||| | ||||| || || |||||| | ||||| |||||| Sbjct 45192 TTCTTTCGCCTCCATCTTCTGGTTGAAGAAACGTGGCCTCATGGCTGGTCTTACCTTCTC 45251 Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||||||||| ||||| ||||| ||||| |||||| Sbjct 45252 CAACGAGCTGATCTCCCGTGATGAGGGTCTCCAC 45285 >seq927 Length=373674 Score = 105 bits (116), Expect = 8e-18 Identities = 274/411 (67%), Gaps = 20/411 (5%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG 16032 |||||||||||||| || |||| ||| || | ||| ||| ||||||||||| | | Sbjct 175729 AAACCATCCATCTCGGTTAAAATCTGATTGAGAGTGGCTTCTCGTTCATCATTTCCACCA 175788 Query 16033 GCATACCA-CCAGC---ACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 || | | ||||| || || |||||| | ||||||||||| |||||||||| Sbjct 175789 CCAAATGAACCAGCTTTACCACGAGCCTTTCCGATTGCATCAATCTCGTCAATGAAGATA 175848 Query 16089 ATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 || || || ||| | | || | | |||||||| || || | || || ||| Sbjct 175849 ATACAAGGGGTATTCTTTCTGGCCATCGCGAAGAGATCTCGAACTCTGGAAGCACCAACA 175908 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAA-CATTG-----GATGAAGGGGACATTA 16202 || ||||||||||||||||| | ||||| || || || ||| || ||| Sbjct 175909 CCGACAAACATCTCCACAAACT------CGGAACCACTGACGCTGAAGAAAGGTACACCC 175962 Query 16203 GATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGG 16262 ||||| || || |||| || || | ||||||||| ||||| || ||| | ||| Sbjct 175963 GATTCTCCGGCTGTGGCCTTTGCTAGTAAAGTCTTACCGGTACCAGGTGGACCAGAAAGG 176022 Query 16263 AGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAA 16322 | ||| ||||| || ||||| || || || | || ||||||| ||| ||||| Sbjct 176023 ATGGCTCCTCGAGGGATCTTAGCACCCAATCTTTCGAATTGCTCAGGTGTCTTTAGAAAT 176082 Query 16323 TCCAC-AATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 || ||| | | | |||| ||||| |||| || ||| ||||||| Sbjct 176083 GAAACGAATTCCATAATCTCCATC-TTGGCTTCGTCCATACCCGCAACATC 176132 >seq567 Length=145468 Score = 82.4 bits (90), Expect = 9e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 163600 TGGTGCGGGTGTTATTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTCTTCAATCA 163659 ||| || ||||| |||||| | |||||| || ||||||||||| | ||||||||||| Sbjct 88607 TGGCGCAGGTGTAATTGATGCTGACTACCGTGGCCAAGTCAAAGTCCTCCTCTTCAATCA 88666 Query 163660 TGGAGACAAAGACTTTGAGGTAAAGAGGGGGGAGCGCATCGCACAACTTGTTCTT-GAGA 163718 || || ||||| || ||||| ||| ||| || || | || ||| ||| |||| |||| Sbjct 88667 CGGCGAGAAAGATTTCGAGGTCAAGGAGGGAGATCGTGTAGCTCAA-TTGGTCTTGGAGA 88725 Query 163719 GGTGTGAGACACCCGATGT 163737 | | |||||||| || Sbjct 88726 GAATCTACACACCCGAGGT 88744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620729100594080