Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq843 168 8e-37 >seq843 Length=104768 Score = 168 bits (186), Expect = 8e-37 Identities = 1112/1758 (63%), Gaps = 75/1758 (4%) Strand=Plus/Minus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATAC- 109558 |||||| || ||||| ||||| |||||| |||||| || || ||||| | || ||| Sbjct 64809 GTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGACGATGGT 64750 Query 109559 ACTTTTGGCTA-ATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCC 109617 || || || | || ||||| || |||||||| | | |||||||||| | || |||| Sbjct 64749 ACGTT--GCGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCCGGGATGTTT 64692 Query 109618 ACGATGTTTTGAATAGAGCCACCAGCCTTCACCA-TGAGA---TCCTTCATCTCTTTCGA 109673 | ||||| || || |||||| ||| || ||| | | |||||| | | || Sbjct 64691 GGAACATTTTGGATTGATCCACCA----TCAGCAATGATACGGTTCTTCATGTTGTCGGA 64636 Query 109674 CCAGAGACCGACCTTTTTGAGATCGTCAACAAG--ATGCTTGTTGACCACGACAAATTCA 109731 ||| || || | | |||||| | | ||| ||| |||||| || ||||| Sbjct 64635 CCAAAGTCCCATATCGACGAGATCCTTGAGAAGCCATGG--GTTGACAACTTGGAATTCT 64578 Query 109732 CCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTG 109791 |||||||| ||||| ||||||||| | || || || ||||| ||||| || Sbjct 64577 CCAGCAAGGACACGTCGAGAGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTAAAT 64518 Query 109792 CCTAGGATTTGTGCAGTGGAA---GCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGG 109848 || || ||||| | ||| | ||||| ||||| ||||| | ||| | |||||| ||| Sbjct 64517 CCAAGAATTTG---ACTGGTACTGGCTGTTGGCATAGGAGCGACGAGCAAACTGTTACGG 64461 Query 109849 AGACCCT-TCG-----TCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTA 109902 | ||| | | | ||| | | ||| || | || |||||| || || | || Sbjct 64460 ATACCGTGTTGAGAGATCTGTTGCT--TCAAGC-TAGC---CCAATCCCAAAGATCGGTA 64407 Query 109903 AATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCC 109962 | || |||| |||||| || ||| || | |||| || ||||| || || Sbjct 64406 GGT---GTGACACC---CCACATGTCATATTGGAGCTCGCCCTTAGAGGCAGGCGAGCC- 64354 Query 109963 TTGA-AACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGC 110021 |||| || |||| || | || | || || |||||||| ||||| | || || Sbjct 64353 TTGATAAGTCTCATATGGACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAGC 64294 Query 110022 ATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGG 110081 || || || ||||| ||||| || || | | | | ||| | ||||| || Sbjct 64293 GTGGTAAATGGTCTCGAAAATTTGGATGTTGAGGTGCTTGGCCTCCGGGGATTCGAAAGG 64234 Query 110082 AAGACCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATG 110141 ||||| | | | || |||| || ||||| |||||||||||| |||| || | || Sbjct 64233 AAGACGAAGAGCCAAGAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTG 64174 Query 110142 CTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATT 110201 | || || || || ||||| ||||| ||||| | | ||| Sbjct 64173 ACGGAAATTGCTCTTTCTTGCCTCAGGAACCGGGTAGTAGTTGACATCGATAATCTTATT 64114 Query 110202 GAGATTCTTCGTCACAGTCTTCGT-GATTTCATGGAGTTTGTCGTAATCGAACGTTTTCG 110260 | ||||| ||| ||| | || || || || || | | | || | || | Sbjct 64113 CAAGTTCTTGACGACAA-CTTGGCAGACCTCGTGAAGCTTTTGGAAGTCATAAGTGGCGG 64055 Query 110261 TCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGT 110320 ||| || || ||||| | |||||||||| || || | |||||| |||| ||| | Sbjct 64054 TCTTCTCATCAACATAGGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCAT 63995 Query 110321 CTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGT 110380 || | ||| || | ||||| || ||||||||||| || ||| ||| | | Sbjct 63994 CTGGTGCACAGTACTCGACGATTTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGAT 63935 Query 110381 TCTTCTGATT-CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTT 110439 |||| || || | ||| | |||||| |||||||| || |||||| | ||| | || || Sbjct 63934 TCTTTTGGTTGCTCTTTCG-GTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTC 63876 Query 110440 TCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCG 110499 || || || | || || || | | ||| | | ||| || ||| | ||| Sbjct 63875 TCAGTTTGAGCCTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGA----TGCTCTTGCG 63820 Query 110500 AGACCTT--CCTC---CTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACAT 110554 | |||| |||| |||||| || ||||| | || || || | ||||| |||| Sbjct 63819 AC-CCTTGCCCTCAGACTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACAT 63761 Query 110555 CAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCC 110614 | | | ||| || || || || | | | ||| | | || ||||| | Sbjct 63760 CGGCCAAACCAGGACACTCGTTAGGGCACATCAATGTCCAGTCGAGATTCTTTTCAACAC 63701 Query 110615 TCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTT 110674 ||||||||| || || |||||||| | || |||| || |||||| |||| |||| | Sbjct 63700 GCTTCATGAAGAGATCTGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCT 63641 Query 110675 CATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGA 110734 | | || ||||| || || || | || || | | ||| | ||||||||| || | Sbjct 63640 CCTTTCCATGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAA 63581 Query 110735 GATAGACAGCGATGGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTG 110788 | |||| |||| | || | |||| ||| | || | |||||| | || | Sbjct 63580 GGTAGATGGCGAAAGCACC---AGGACGCTTGTTACCACCTTGATCAACATATCTGGCGG 63524 Query 110789 TGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAA 110848 || ||||| || ||||||||||||| ||||| | ||| | || || ||||| | Sbjct 63523 TGTTGTTGAAAACTCTGAGCATAGGAACGATTCCGTTGGAGTTTCCGTTAGTACCGGCGA 63464 Query 110849 TTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTAC 110908 | | | ||||| || ||| | || | ||| |||||||| || ||| Sbjct 63463 TATAAGCGCCGGTCGCACGGATTCTGTGAACATTGAGACCGATACCACCAGCATTCTTTG 63404 Query 110909 TAAT--TTGTGCACACTCTGTGA-GTGTACCATAAATACCATCAATCGAATCTGCCTTGT 110965 ||| | | ||| | ||| | | |||| | |||||||||||||| || |||| Sbjct 63403 AAATCATGGCGCA-AATCTTTAACGTGT--CGTAAATACCATCAATGCTGTCCTCCTTCA 63347 Query 110966 TGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAG 111025 || | || || ||||| || || | || | | || || || || |||||| || | Sbjct 63346 TGTCGATAAGGAAGCAGGATGAAAGTTGTGCCTGTGGTGTGCCAGCTGCGAAGAGGGTTG 63287 Query 111026 GTGTCGCATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGG 111083 | | || || ||| || ||| ||||||| |||||| || |||| || | Sbjct 63286 GGGAGGCGTGGGTGA--AGTATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTC 63229 Query 111084 TACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGAT 111143 | ||| | ||||||||| || | ||||| ||||| | ||||| || || |||| Sbjct 63228 GATATCCTCACCGTGAATTCCGACCGCAACACGCATAATCATATGCTGTGGACGTTCGCA 63169 Query 111144 TAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCC 111203 | ||| ||||| | || | || || ||| |||||||||| ||| |||||| Sbjct 63168 GATCTTGCCATCGAGGCGGAGGAGATATGATCGCTCGAGGGTCTTGAAACCGAAGTATTG 63109 Query 111204 AAAATCGAAATCACGATC 111221 | | | ||||||||| || Sbjct 63108 ATAGTTGAAATCACGGTC 63091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588963381189200