Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq843 288 1e-72 seq908 134 2e-26 seq927 125 8e-24 seq567 84.2 3e-11 >seq843 Length=104768 Score = 288 bits (318), Expect = 1e-72 Identities = 1187/1832 (65%), Gaps = 69/1832 (4%) Strand=Plus/Minus Query 105581 GCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTAC-ATATG 105639 ||| ||| |||||||||||||| || |||||||| || | ||||| || | | | ||| Sbjct 64910 GCCATAGTACGGAGATAGTACATTCCAGTCTTGAGACCCAGCTTCCA-GCCTGCGAAATG 64852 Query 105640 CATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTG 105699 |||| | || ||| ||| ||||| | |||| | ||||| |||| || Sbjct 64851 CATACTGGTGATCTTACCCATGGTTGGGTCCTTCATGTGGATGTTCATTGATTGAGATTG 64792 Query 105700 GTCAATGAAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCAT--CTTGATTTCC 105757 |||||||| |||||| | || ||||| | | || | | | | | ||| ||| Sbjct 64791 ATCAATGAATGCACCACGGTCGGCAGCCATCTGGACGA--TGGTACGTTGCGAGATCTCC 64734 Query 105758 CACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAA 105817 || || || ||| ||| |||||||||| | ||||| | || | |||||| ||||| Sbjct 64733 CAAACGGTCTTGTAAAGAGCCTTGATATCAGCCGGGATGTTTGGAACATTTTGGATTGAT 64674 Query 105818 CCCCCCGCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGA 105877 || || | | || | | |||||| | | ||||||||| || || | |||| Sbjct 64673 CCACCATCAGCAATGATACGGTTCTTCATGTTGTCGGACCAAAGTCCCATATCGACGAGA 64614 Query 105878 TCATTGACGAG--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGA- 105934 || |||| || ||| |||||||| || ||||| || ||| | || ||| Sbjct 64613 TCCTTGAGAAGCCATGG--GTTGACAACTTGGAATTCTCCAGCAAGGACACGTCG-AGAG 64557 Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGTGGA 105993 |||||||| | || || || || ||||| || ||| | |||||| |||| ||| Sbjct 64556 TAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTAA-ATCCAAGAATTTGACTGGTACT 64498 Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTC 106053 |||||||||||| || || | | | ||||||||| | ||| | || ||| ||| Sbjct 64497 GGCTGTTGGCATAGGAGCGACGAGCAAACTGTTACGGATACCGTGTTGAGAGATCTGTTG 64438 Query 106054 CTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATATCAAATTGA 106111 ||| | | |||| || | || | | ||| | || ||||||| ||| |||| Sbjct 64437 CTTCAAGCTAGCCCAATCCCAAA-GATCGGTAGGTGTGACAC-CCCACATGTCATATTGG 64380 Query 106112 AGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCC 106171 ||| | || | || | || || || | | | |||||||| | ||| || | ||| Sbjct 64379 AGCTCGCCCTTAGAGGCAGGCGAGCCTTGATAAGTCTCATATGGACCATGAATCTTTGCC 64320 Query 106172 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 106231 || || | || || | ||||| || ||||| || || || | || | Sbjct 64319 AACTCCATGGAAGCAGTCAAAGCAGCGTGGTAAATGGTCTCGAAAATTTGGATGTTGAGG 64260 Query 106232 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATA-AATACATCCGCGAGACC 106290 | |||||| || || || || | | || | | | | || |||| || ||||| Sbjct 64259 TGCTTGGCCTCCGGGGATTCGAAAG-GAAGACGAAGAGCCAAGAAGGCATCAGCAAGACC 64201 Query 106291 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---AC 106347 ||||||||| | | ||||||||||||| || | ||| ||||| || |||| || Sbjct 64200 TTGAACACCGAGAGCAATAGGTCTGTGACGGAAATTGCTCTTTCTTGC---CTCAGGAAC 64144 Query 106348 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT-GATTT 106406 || || | || || || | || | || ||| |||| ||| | || | Sbjct 64143 CGGGTAGTAGTTGACATCGATAATCTTATTCAAGTTCTTGACGACAA-CTTGGCAGACCT 64085 Query 106407 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGA 106466 | ||||| |||| | ||| ||||| |||| |||| ||||| |||| || || | Sbjct 64084 CGTGAAGCTTTTGGAAGTCATAAGTGGCGGTCTTCTCATCAACATAGGTTGGGAGAGCAA 64025 Query 106467 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 106526 |||||||||||||||||||| |||||| | |||||| | ||||| || | Sbjct 64024 GCGATGCCAAATTGCAAACAGCGACCTCATCTGGTGCACAGTACTCGACGATTTCAGTGC 63965 Query 106527 ACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCAT 106586 |||||||||| || || || || | |||||||||||| |||||| |||||| |||| Sbjct 63964 ACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCAT 63905 Query 106587 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 ||||||| |||||| | || | || ||||| || || | || || || | | ||| | Sbjct 63904 CCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCAAGGATAGAGTACCAAA 63845 Query 106647 CATCGGCGGC--TGGTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGA 106703 | ||| || | | | || | ||| | ||||| | |||||| || || | Sbjct 63844 GCTTTTGGGCTTTGATGCTCTTGC---GACCCTTGCCCTCAGACTCGTATTTCTCATACA 63788 Query 106704 GGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAA 106763 ||||| ||||| ||||| | |||| | ||| || || || || || | | Sbjct 63787 ACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACCAGGACACTCGTTAGGGCACATCA 63728 Query 106764 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATG 106823 | ||| | | || ||||| ||||||||||| || ||||||||||| || | Sbjct 63727 ATGTCCAGTCGAGATTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGAGCGT 63668 Query 106824 AAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACT 106883 | |||||||| | ||| |||| || | || ||||| ||| | || ||||||| Sbjct 63667 AGAAGAGATCACGGGCACGAACCTCCTCCTTTCCATGGTTCTTTCGGAGGTCGAGGAACT 63608 Query 106884 CCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC---- 106939 | | | ||| ||||||||||||||||| |||| |||| || || ||||| Sbjct 63607 CGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACC---AGGACGCTTGT 63551 Query 106940 --CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATAC 106997 ||| |||||| ||||| | || ||| ||| || || | ||||| |||| || | Sbjct 63550 TACCACCTTGATCAACATATCTGGCGGTGTTGTTGAAAACTCTGAGCATAGGAACGATTC 63491 Query 106998 CATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCAC--ATCATGG 107053 | | || | || || || || ||| ||| | | | || ||| || || Sbjct 63490 CGTTGGAGTTTCCGTTAGTACCGGCGATATAAGCG------CCGGTCGCACGGATTCTG- 63438 Query 107054 ATGTGCAT----CCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGA 107107 || ||| || ||||| ||||| |||||| || | ||||| | || ||| Sbjct 63437 -TGAACATTGAGACCGATACCACCAGCATTCTTTGAAATCATGGCGCA-AATCTTTAA-C 63381 Query 107108 GTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATC 107167 || | || ||||| | || ||||||||| || ||||||||||||| || | Sbjct 63380 GTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGGATGAAAGT 63321 Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG- 107226 || | |||||| ||||| |||||||||||| | ||||| |||| || ||| Sbjct 63320 TGTGCCTGTGGTGTGCCAGCTGCGAAGAGGGTTGGGGAGGCGTGGGTGAA-GTA-TTTGC 63263 Query 107227 -GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGG 107285 ||||||| || ||| ||||| | | ||| || || || || ||||| || |||| | Sbjct 63262 TGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACCGTGAATTCCGACCG 63203 Query 107286 CCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGAT 107345 | |||||||||| ||| | || || ||| || |||||||||| || | |||| Sbjct 63202 CAACACGCATAATCATATGCTGTGGACGTTCGCAGATCTTGCCATCGAGGCGGAGGAGAT 63143 Query 107346 A-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376 | | || ||| ||||| |||| ||| ||||| Sbjct 63142 ATGATC-GCTCGAGGGTCTTGAAACCGAAGTA 63112 >seq908 Length=77775 Score = 134 bits (148), Expect = 2e-26 Identities = 338/508 (67%), Gaps = 12/508 (2%) Strand=Plus/Minus Query 116993 CAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAA 117052 |||| |||||||| |||||||||||||| || ||||| ||||| ||||||||||| | Sbjct 45577 CAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATGTTCTCCATAAAGTCGA 45518 Query 117053 ATGGATTCTTCGCGTTCCAAATGGGTGGCACC-CCAACTTGTTTGAGGAGACGATCCGAC 117111 |||| || | || ||| | || || | |||||||||||| | Sbjct 45517 ATGGGTTGGCAACCTTGTAAACCT-TCTCATTGCCGAGGGAAAGGAGGAGACGATCAGCG 45459 Query 117112 ACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACATGGGAGT 117171 || |||||||||| | |||| | | |||||| |||| || ||| || || Sbjct 45458 ACGAACTCAATGTATTGCTTCATCAGGTTGGCGTTCATGCCGAGAAGTGCACAAGGAAGA 45399 Query 117172 GCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTT 117231 || || | |||| ||| |||||||||||| ||||| | | || ||| |||| | Sbjct 45398 GCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACGGCCTGGACTGCA 45339 Query 117232 TCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCA----AACTCCTGGTG 117287 | | | || | || |||| |||||| | |||| || || ||| Sbjct 45338 GCCTTGCTTGGGCGATGCTTCAAATGGGAGAAGAG----AAGGCATGCGAAGTCGGTGTG 45283 Query 117288 GAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCG 117347 |||||||||||| ||||| || || || || |||||| || || | |||||| || || Sbjct 45282 GAGACCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTAAGACCAGCCATGAGGCCACG 45223 Query 117348 CTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGC 117407 ||||||||||| | || | | ||| || || ||||||||||||||| ||| || Sbjct 45222 TTTCTTCAACCAGAAGATGGAGGCGAAAGAACCACTGAAGAAGATACCCTCAACAGCGGC 45163 Query 117408 AAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCATTTCATTGCCC 117466 || |||| ||| || | ||| |||| | || | |||| | | |||| | |||| Sbjct 45162 GAAGGCAACAAGACGTTGGGCAAAGGTG-GACTCCTTGTCTTGGATCCATCGGACAGCCC 45104 Query 117467 ATTTCGCCTTCTTCTCAATACATGGTAC 117494 | | |||||||||| ||| || || || Sbjct 45103 AATCAGCCTTCTTCTTAATGCAGGGAAC 45076 >seq927 Length=373674 Score = 125 bits (138), Expect = 8e-24 Identities = 283/419 (68%), Gaps = 20/419 (5%) Strand=Plus/Plus Query 9274 CATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCAT 9333 || ||| |||||||||||||| || |||| || || | ||| ||| |||||||||| Sbjct 175721 CAGTATTGAAACCATCCATCTCGGTTAAAATCTGATTGAGAGTGGCTTCTCGTTCATCAT 175780 Query 9334 T--CGCTGGCATACCA-CCAGC---ACTGCGTTGCTTTCCCACGGCATCAATCTCATCAA 9387 | | | || | | ||||| || || |||||| | ||||||||||| |||| Sbjct 175781 TTCCACCACCAAATGAACCAGCTTTACCACGAGCCTTTCCGATTGCATCAATCTCGTCAA 175840 Query 9388 TGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGG 9447 |||||| |||||| || ||| | | ||| || | |||||||| ||||| || | Sbjct 175841 TGAAGATAATACAAGGGGTATTCTTTCTGGCCATCGCGAAGAGATCTCGAACTCTGGAAG 175900 Query 9448 CGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA-CATTG-----GATGAAGG 9501 | || ||||| ||||||||||||||||| | ||||| || || || ||| | Sbjct 175901 CACCAACACCGACAAACATCTCCACAAACT------CGGAACCACTGACGCTGAAGAAAG 175954 Query 9502 GGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTAC 9561 | ||| ||||| || || |||| || || | ||||||||| ||||| || || Sbjct 175955 GTACACCCGATTCTCCGGCTGTGGCCTTTGCTAGTAAAGTCTTACCGGTACCAGGTGGAC 176014 Query 9562 CCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCT 9621 | | |||| ||| || || || ||||| || || || | || ||||||| || Sbjct 176015 CAGAAAGGATGGCTCCTCGAGGGATCTTAGCACCCAATCTTTCGAATTGCTCAGGTGTCT 176074 Query 9622 TGAGAAAATCCAC-AATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 9679 | ||||| || ||| | | | |||| ||||| |||| || ||| ||||||| Sbjct 176075 TTAGAAATGAAACGAATTCCATAATCTCCATC-TTGGCTTCGTCCATACCCGCAACATC 176132 >seq567 Length=145468 Score = 84.2 bits (92), Expect = 3e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 155097 TGGTGCGGGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCA 155156 ||| || ||||| |||||| | ||||| || ||||||||||| | ||||||||||| Sbjct 88607 TGGCGCAGGTGTAATTGATGCTGACTACCGTGGCCAAGTCAAAGTCCTCCTCTTCAATCA 88666 Query 155157 CGGAGACAAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCG 155216 ||| || ||||| || ||||| ||| | || ||||| | || ||| | ||| | ||| | Sbjct 88667 CGGCGAGAAAGATTTCGAGGTCAAGGAGGGAGATCGTGTAGCTCAATTGGTCTTGGAGAG 88726 Query 155217 CTGTGAAACACCCGATGTGGAGGAAATTGGTGTTCTTGAAGAGACAGAGAGAGGTGCGGG 155276 | |||||||| || ||| | | | ||||||| | || || ||||| Sbjct 88727 AATCTACACACCCGAGGTCTTGGAGGTCCAGGAATTGGAAGAGAGCGTTAGGGGAGCGGG 88786 Query 155277 TGGATTTGG 155285 |||||||| Sbjct 88787 AGGATTTGG 88795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589968159661360