Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq843 288 1e-72
seq908 134 2e-26
seq927 125 8e-24
seq567 84.2 3e-11
>seq843
Length=104768
Score = 288 bits (318), Expect = 1e-72
Identities = 1187/1832 (65%), Gaps = 69/1832 (4%)
Strand=Plus/Minus
Query 105581 GCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTAC-ATATG 105639
||| ||| |||||||||||||| || |||||||| || | ||||| || | | | |||
Sbjct 64910 GCCATAGTACGGAGATAGTACATTCCAGTCTTGAGACCCAGCTTCCA-GCCTGCGAAATG 64852
Query 105640 CATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTG 105699
|||| | || ||| ||| ||||| | |||| | ||||| |||| ||
Sbjct 64851 CATACTGGTGATCTTACCCATGGTTGGGTCCTTCATGTGGATGTTCATTGATTGAGATTG 64792
Query 105700 GTCAATGAAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCAT--CTTGATTTCC 105757
|||||||| |||||| | || ||||| | | || | | | | | ||| |||
Sbjct 64791 ATCAATGAATGCACCACGGTCGGCAGCCATCTGGACGA--TGGTACGTTGCGAGATCTCC 64734
Query 105758 CACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAA 105817
|| || || ||| ||| |||||||||| | ||||| | || | |||||| |||||
Sbjct 64733 CAAACGGTCTTGTAAAGAGCCTTGATATCAGCCGGGATGTTTGGAACATTTTGGATTGAT 64674
Query 105818 CCCCCCGCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGA 105877
|| || | | || | | |||||| | | ||||||||| || || | ||||
Sbjct 64673 CCACCATCAGCAATGATACGGTTCTTCATGTTGTCGGACCAAAGTCCCATATCGACGAGA 64614
Query 105878 TCATTGACGAG--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGA- 105934
|| |||| || ||| |||||||| || ||||| || ||| | || |||
Sbjct 64613 TCCTTGAGAAGCCATGG--GTTGACAACTTGGAATTCTCCAGCAAGGACACGTCG-AGAG 64557
Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGTGGA 105993
|||||||| | || || || || ||||| || ||| | |||||| |||| |||
Sbjct 64556 TAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTAA-ATCCAAGAATTTGACTGGTACT 64498
Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTC 106053
|||||||||||| || || | | | ||||||||| | ||| | || ||| |||
Sbjct 64497 GGCTGTTGGCATAGGAGCGACGAGCAAACTGTTACGGATACCGTGTTGAGAGATCTGTTG 64438
Query 106054 CTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATATCAAATTGA 106111
||| | | |||| || | || | | ||| | || ||||||| ||| ||||
Sbjct 64437 CTTCAAGCTAGCCCAATCCCAAA-GATCGGTAGGTGTGACAC-CCCACATGTCATATTGG 64380
Query 106112 AGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCC 106171
||| | || | || | || || || | | | |||||||| | ||| || | |||
Sbjct 64379 AGCTCGCCCTTAGAGGCAGGCGAGCCTTGATAAGTCTCATATGGACCATGAATCTTTGCC 64320
Query 106172 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 106231
|| || | || || | ||||| || ||||| || || || | || |
Sbjct 64319 AACTCCATGGAAGCAGTCAAAGCAGCGTGGTAAATGGTCTCGAAAATTTGGATGTTGAGG 64260
Query 106232 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATA-AATACATCCGCGAGACC 106290
| |||||| || || || || | | || | | | | || |||| || |||||
Sbjct 64259 TGCTTGGCCTCCGGGGATTCGAAAG-GAAGACGAAGAGCCAAGAAGGCATCAGCAAGACC 64201
Query 106291 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---AC 106347
||||||||| | | ||||||||||||| || | ||| ||||| || |||| ||
Sbjct 64200 TTGAACACCGAGAGCAATAGGTCTGTGACGGAAATTGCTCTTTCTTGC---CTCAGGAAC 64144
Query 106348 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT-GATTT 106406
|| || | || || || | || | || ||| |||| ||| | || |
Sbjct 64143 CGGGTAGTAGTTGACATCGATAATCTTATTCAAGTTCTTGACGACAA-CTTGGCAGACCT 64085
Query 106407 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGA 106466
| ||||| |||| | ||| ||||| |||| |||| ||||| |||| || || |
Sbjct 64084 CGTGAAGCTTTTGGAAGTCATAAGTGGCGGTCTTCTCATCAACATAGGTTGGGAGAGCAA 64025
Query 106467 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 106526
|||||||||||||||||||| |||||| | |||||| | ||||| || |
Sbjct 64024 GCGATGCCAAATTGCAAACAGCGACCTCATCTGGTGCACAGTACTCGACGATTTCAGTGC 63965
Query 106527 ACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCAT 106586
|||||||||| || || || || | |||||||||||| |||||| |||||| ||||
Sbjct 63964 ACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCAT 63905
Query 106587 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646
||||||| |||||| | || | || ||||| || || | || || || | | ||| |
Sbjct 63904 CCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCAAGGATAGAGTACCAAA 63845
Query 106647 CATCGGCGGC--TGGTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGA 106703
| ||| || | | | || | ||| | ||||| | |||||| || || |
Sbjct 63844 GCTTTTGGGCTTTGATGCTCTTGC---GACCCTTGCCCTCAGACTCGTATTTCTCATACA 63788
Query 106704 GGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAA 106763
||||| ||||| ||||| | |||| | ||| || || || || || | |
Sbjct 63787 ACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACCAGGACACTCGTTAGGGCACATCA 63728
Query 106764 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATG 106823
| ||| | | || ||||| ||||||||||| || ||||||||||| || |
Sbjct 63727 ATGTCCAGTCGAGATTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGAGCGT 63668
Query 106824 AAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACT 106883
| |||||||| | ||| |||| || | || ||||| ||| | || |||||||
Sbjct 63667 AGAAGAGATCACGGGCACGAACCTCCTCCTTTCCATGGTTCTTTCGGAGGTCGAGGAACT 63608
Query 106884 CCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC---- 106939
| | | ||| ||||||||||||||||| |||| |||| || || |||||
Sbjct 63607 CGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACC---AGGACGCTTGT 63551
Query 106940 --CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATAC 106997
||| |||||| ||||| | || ||| ||| || || | ||||| |||| || |
Sbjct 63550 TACCACCTTGATCAACATATCTGGCGGTGTTGTTGAAAACTCTGAGCATAGGAACGATTC 63491
Query 106998 CATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCAC--ATCATGG 107053
| | || | || || || || ||| ||| | | | || ||| || ||
Sbjct 63490 CGTTGGAGTTTCCGTTAGTACCGGCGATATAAGCG------CCGGTCGCACGGATTCTG- 63438
Query 107054 ATGTGCAT----CCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGA 107107
|| ||| || ||||| ||||| |||||| || | ||||| | || |||
Sbjct 63437 -TGAACATTGAGACCGATACCACCAGCATTCTTTGAAATCATGGCGCA-AATCTTTAA-C 63381
Query 107108 GTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATC 107167
|| | || ||||| | || ||||||||| || ||||||||||||| || |
Sbjct 63380 GTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGGATGAAAGT 63321
Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG- 107226
|| | |||||| ||||| |||||||||||| | ||||| |||| || |||
Sbjct 63320 TGTGCCTGTGGTGTGCCAGCTGCGAAGAGGGTTGGGGAGGCGTGGGTGAA-GTA-TTTGC 63263
Query 107227 -GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGG 107285
||||||| || ||| ||||| | | ||| || || || || ||||| || |||| |
Sbjct 63262 TGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACCGTGAATTCCGACCG 63203
Query 107286 CCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGAT 107345
| |||||||||| ||| | || || ||| || |||||||||| || | ||||
Sbjct 63202 CAACACGCATAATCATATGCTGTGGACGTTCGCAGATCTTGCCATCGAGGCGGAGGAGAT 63143
Query 107346 A-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376
| | || ||| ||||| |||| ||| |||||
Sbjct 63142 ATGATC-GCTCGAGGGTCTTGAAACCGAAGTA 63112
>seq908
Length=77775
Score = 134 bits (148), Expect = 2e-26
Identities = 338/508 (67%), Gaps = 12/508 (2%)
Strand=Plus/Minus
Query 116993 CAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAA 117052
|||| |||||||| |||||||||||||| || ||||| ||||| ||||||||||| |
Sbjct 45577 CAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATGTTCTCCATAAAGTCGA 45518
Query 117053 ATGGATTCTTCGCGTTCCAAATGGGTGGCACC-CCAACTTGTTTGAGGAGACGATCCGAC 117111
|||| || | || ||| | || || | |||||||||||| |
Sbjct 45517 ATGGGTTGGCAACCTTGTAAACCT-TCTCATTGCCGAGGGAAAGGAGGAGACGATCAGCG 45459
Query 117112 ACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACATGGGAGT 117171
|| |||||||||| | |||| | | |||||| |||| || ||| || ||
Sbjct 45458 ACGAACTCAATGTATTGCTTCATCAGGTTGGCGTTCATGCCGAGAAGTGCACAAGGAAGA 45399
Query 117172 GCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTT 117231
|| || | |||| ||| |||||||||||| ||||| | | || ||| |||| |
Sbjct 45398 GCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACGGCCTGGACTGCA 45339
Query 117232 TCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCA----AACTCCTGGTG 117287
| | | || | || |||| |||||| | |||| || || |||
Sbjct 45338 GCCTTGCTTGGGCGATGCTTCAAATGGGAGAAGAG----AAGGCATGCGAAGTCGGTGTG 45283
Query 117288 GAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCG 117347
|||||||||||| ||||| || || || || |||||| || || | |||||| || ||
Sbjct 45282 GAGACCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTAAGACCAGCCATGAGGCCACG 45223
Query 117348 CTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGC 117407
||||||||||| | || | | ||| || || ||||||||||||||| ||| ||
Sbjct 45222 TTTCTTCAACCAGAAGATGGAGGCGAAAGAACCACTGAAGAAGATACCCTCAACAGCGGC 45163
Query 117408 AAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCATTTCATTGCCC 117466
|| |||| ||| || | ||| |||| | || | |||| | | |||| | ||||
Sbjct 45162 GAAGGCAACAAGACGTTGGGCAAAGGTG-GACTCCTTGTCTTGGATCCATCGGACAGCCC 45104
Query 117467 ATTTCGCCTTCTTCTCAATACATGGTAC 117494
| | |||||||||| ||| || || ||
Sbjct 45103 AATCAGCCTTCTTCTTAATGCAGGGAAC 45076
>seq927
Length=373674
Score = 125 bits (138), Expect = 8e-24
Identities = 283/419 (68%), Gaps = 20/419 (5%)
Strand=Plus/Plus
Query 9274 CATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCAT 9333
|| ||| |||||||||||||| || |||| || || | ||| ||| ||||||||||
Sbjct 175721 CAGTATTGAAACCATCCATCTCGGTTAAAATCTGATTGAGAGTGGCTTCTCGTTCATCAT 175780
Query 9334 T--CGCTGGCATACCA-CCAGC---ACTGCGTTGCTTTCCCACGGCATCAATCTCATCAA 9387
| | | || | | ||||| || || |||||| | ||||||||||| ||||
Sbjct 175781 TTCCACCACCAAATGAACCAGCTTTACCACGAGCCTTTCCGATTGCATCAATCTCGTCAA 175840
Query 9388 TGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGG 9447
|||||| |||||| || ||| | | ||| || | |||||||| ||||| || |
Sbjct 175841 TGAAGATAATACAAGGGGTATTCTTTCTGGCCATCGCGAAGAGATCTCGAACTCTGGAAG 175900
Query 9448 CGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA-CATTG-----GATGAAGG 9501
| || ||||| ||||||||||||||||| | ||||| || || || ||| |
Sbjct 175901 CACCAACACCGACAAACATCTCCACAAACT------CGGAACCACTGACGCTGAAGAAAG 175954
Query 9502 GGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTAC 9561
| ||| ||||| || || |||| || || | ||||||||| ||||| || ||
Sbjct 175955 GTACACCCGATTCTCCGGCTGTGGCCTTTGCTAGTAAAGTCTTACCGGTACCAGGTGGAC 176014
Query 9562 CCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCT 9621
| | |||| ||| || || || ||||| || || || | || ||||||| ||
Sbjct 176015 CAGAAAGGATGGCTCCTCGAGGGATCTTAGCACCCAATCTTTCGAATTGCTCAGGTGTCT 176074
Query 9622 TGAGAAAATCCAC-AATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 9679
| ||||| || ||| | | | |||| ||||| |||| || ||| |||||||
Sbjct 176075 TTAGAAATGAAACGAATTCCATAATCTCCATC-TTGGCTTCGTCCATACCCGCAACATC 176132
>seq567
Length=145468
Score = 84.2 bits (92), Expect = 3e-11
Identities = 132/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 155097 TGGTGCGGGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCA 155156
||| || ||||| |||||| | ||||| || ||||||||||| | |||||||||||
Sbjct 88607 TGGCGCAGGTGTAATTGATGCTGACTACCGTGGCCAAGTCAAAGTCCTCCTCTTCAATCA 88666
Query 155157 CGGAGACAAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCG 155216
||| || ||||| || ||||| ||| | || ||||| | || ||| | ||| | ||| |
Sbjct 88667 CGGCGAGAAAGATTTCGAGGTCAAGGAGGGAGATCGTGTAGCTCAATTGGTCTTGGAGAG 88726
Query 155217 CTGTGAAACACCCGATGTGGAGGAAATTGGTGTTCTTGAAGAGACAGAGAGAGGTGCGGG 155276
| |||||||| || ||| | | | ||||||| | || || |||||
Sbjct 88727 AATCTACACACCCGAGGTCTTGGAGGTCCAGGAATTGGAAGAGAGCGTTAGGGGAGCGGG 88786
Query 155277 TGGATTTGG 155285
||||||||
Sbjct 88787 AGGATTTGG 88795
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589968159661360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |