Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq1395 136 5e-27
>seq1395
Length=211398
Score = 136 bits (150), Expect = 5e-27
Identities = 194/272 (71%), Gaps = 6/272 (2%)
Strand=Plus/Minus
Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806
|||||||| | |||| | ||||| |||||| ||||| | |||||||| |||||||||
Sbjct 85662 GATATTGCATTTGGTAATGCCCAAAGATTTGGTGTTCCTTTTGGATATGGTGGTCCTCAT 85603
Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTG---GCAGAATTGTA 153863
||||| |||||||| | ||||| |||||| | || || || | || |||| |
Sbjct 85602 GCTGCTTTCTTTGCCGTTAGCGACAAATATAAGCGGAAAATTCCAGGACGCCTCATTGGA 85543
Query 153864 GGTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAG 153923
| | ||| |||||| || | || || ||||| ||||| |||||| |||||
Sbjct 85542 GTT---TCAAAAGATAGACTTGGAGACAAGGCGATGAGATTGGCACTTCAGACTCGAGAG 85486
Query 153924 CAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCT 153983
|| |||||| | ||||| || || ||||| || | |||||||| ||||| | || ||
Sbjct 85485 CAACATATCCGAAGAGAAAAGGCTACCAGCAATGTATGCACAGCACAGGCGTTACTTGCA 85426
Query 153984 AATATGTCTGGATTCTATGCAGCATATCATGG 154015
|||||| || ||||| || | ||||| ||
Sbjct 85425 AATATGAGTGCTTTCTACGCTGTCTATCACGG 85394
Score = 113 bits (124), Expect = 5e-20
Identities = 167/234 (71%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 154872 ATTATGATTACATACCCATCTACACATGGTGTATTTGA-AACTAACATTAGACAGATATG 154930
|| |||||||| ||||||||||| |||||| ||||| | || || | | | ||
Sbjct 84462 ATCATGATTACGTACCCATCTACCTTTGGTGTCTTTGAGCCCGAAGTGAAGGCTG-TCTG 84404
Query 154931 TAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACA 154990
|| | ||||| || |||| ||||| || || | ||||| || ||| | ||||| ||
Sbjct 84403 CGAGTTGGTTCACGAACATGGAGGTCAAGTTTACATGGATGGTGCGAATATGAATGCTCA 84344
Query 154991 GGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAA 155050
| ||| | ||| ||||| ||| |||||||| |||||||| || | || ||
Sbjct 84343 AATTGGATTGTGCTCACCTGGTGAGATTGGGGCAGATGTTTGTCATCTCAATCTTCACAA 84284
Query 155051 AACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104
||||| |||||||| ||||| ||||| ||||| || || ||||| || |||||
Sbjct 84283 GACATTTTGTATTCCTCATGGTGGTGGTGGTCCAGGAGTTGGTCCAATTGGTGT 84230
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579200390365760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |