Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1395 136 5e-27 >seq1395 Length=211398 Score = 136 bits (150), Expect = 5e-27 Identities = 194/272 (71%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806 |||||||| | |||| | ||||| |||||| ||||| | |||||||| ||||||||| Sbjct 85662 GATATTGCATTTGGTAATGCCCAAAGATTTGGTGTTCCTTTTGGATATGGTGGTCCTCAT 85603 Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTG---GCAGAATTGTA 153863 ||||| |||||||| | ||||| |||||| | || || || | || |||| | Sbjct 85602 GCTGCTTTCTTTGCCGTTAGCGACAAATATAAGCGGAAAATTCCAGGACGCCTCATTGGA 85543 Query 153864 GGTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAG 153923 | | ||| |||||| || | || || ||||| ||||| |||||| ||||| Sbjct 85542 GTT---TCAAAAGATAGACTTGGAGACAAGGCGATGAGATTGGCACTTCAGACTCGAGAG 85486 Query 153924 CAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCT 153983 || |||||| | ||||| || || ||||| || | |||||||| ||||| | || || Sbjct 85485 CAACATATCCGAAGAGAAAAGGCTACCAGCAATGTATGCACAGCACAGGCGTTACTTGCA 85426 Query 153984 AATATGTCTGGATTCTATGCAGCATATCATGG 154015 |||||| || ||||| || | ||||| || Sbjct 85425 AATATGAGTGCTTTCTACGCTGTCTATCACGG 85394 Score = 113 bits (124), Expect = 5e-20 Identities = 167/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 154872 ATTATGATTACATACCCATCTACACATGGTGTATTTGA-AACTAACATTAGACAGATATG 154930 || |||||||| ||||||||||| |||||| ||||| | || || | | | || Sbjct 84462 ATCATGATTACGTACCCATCTACCTTTGGTGTCTTTGAGCCCGAAGTGAAGGCTG-TCTG 84404 Query 154931 TAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACA 154990 || | ||||| || |||| ||||| || || | ||||| || ||| | ||||| || Sbjct 84403 CGAGTTGGTTCACGAACATGGAGGTCAAGTTTACATGGATGGTGCGAATATGAATGCTCA 84344 Query 154991 GGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAA 155050 | ||| | ||| ||||| ||| |||||||| |||||||| || | || || Sbjct 84343 AATTGGATTGTGCTCACCTGGTGAGATTGGGGCAGATGTTTGTCATCTCAATCTTCACAA 84284 Query 155051 AACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 ||||| |||||||| ||||| ||||| ||||| || || ||||| || ||||| Sbjct 84283 GACATTTTGTATTCCTCATGGTGGTGGTGGTCCAGGAGTTGGTCCAATTGGTGT 84230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579200390365760