Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1395 131 2e-25 >seq1395 Length=211398 Score = 131 bits (144), Expect = 2e-25 Identities = 193/272 (71%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 158422 GACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCAT 158481 || ||||| | |||| | ||||| |||||| ||||| | ||||| || ||||||||| Sbjct 85662 GATATTGCATTTGGTAATGCCCAAAGATTTGGTGTTCCTTTTGGATATGGTGGTCCTCAT 85603 Query 158482 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGA---ATTGTA 158538 ||||| |||||||| | ||||| |||||| | || || || || | |||| | Sbjct 85602 GCTGCTTTCTTTGCCGTTAGCGACAAATATAAGCGGAAAATTCCAGGACGCCTCATTGGA 85543 Query 158539 GGTCAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAG 158598 | | ||| |||||| || | || || ||||| ||||| |||||| ||||| Sbjct 85542 GTT---TCAAAAGATAGACTTGGAGACAAGGCGATGAGATTGGCACTTCAGACTCGAGAG 85486 Query 158599 CAGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCT 158658 || |||||| ||||||| || || ||||| || | ||||||||||| || | || || Sbjct 85485 CAACATATCCGAAGAGAAAAGGCTACCAGCAATGTATGCACAGCACAGGCGTTACTTGCA 85426 Query 158659 AATATGTCTGGGTTCTATGCAGCATATCATGG 158690 |||||| || ||||| || | ||||| || Sbjct 85425 AATATGAGTGCTTTCTACGCTGTCTATCACGG 85394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588038601003040