Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1406 131 4e-25 seq1483 125 2e-23 >seq1406 Length=252419 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||| | ||| | ||| ||||| || || ||||| |||||||| || | ||| || | Sbjct 215096 GAGTCGGAGAACCAAGTGTAGAGTAGATTCCTTTTGGATATTGTAGTCCGAAAGGGTGCG 215037 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || || || || ||||| || || |||||||||| |||||||| || || ||||| || Sbjct 215036 GCCGTCCTCAAGTTGCTTCCCAGCAAAGATAAGTCTCTGTTGGTCAGGTGGGATGCCCTC 214977 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||||||||| || ||||||||| || || || ||||| || || || ||||| Sbjct 214976 CTTGTCTTGAATCTTCGACTTGACGTTGTCGATAGTATCCGAGGACTCAACCTCGAGGGT 214917 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTAC 195128 | ||||| || ||||| || || || Sbjct 214916 GATGGTCTTGCCGGTCAAGGTCTTGAC 214890 Score = 127 bits (140), Expect = 5e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || |||||||| | ||||| | || || ||| Sbjct 214803 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGATAGAGTACGTCCGTCCTCG 214744 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | ||||| || ||||| ||||| || || ||||| || Sbjct 214743 AGCTGCTTTCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGG 214684 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| || ||||| |||||||| | ||||| Sbjct 214683 ATCTTGGACTTGACGTTATCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTA 214624 Query 195112 CCTGT 195116 || || Sbjct 214623 CCGGT 214619 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| | |||| ||| ||||| || || |||||| || || | ||||| || | || Sbjct 215537 GTGCAAAGTGCTCTCCTTTTGGATGTTATAATCGCTGAGTGTACGGCCATCCTCCAATTG 215478 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||| || | ||| ||||| ||||| || || || || || || || || || Sbjct 215477 CTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGGGATACCCTCCTTATCCTGGATCTT 215418 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | |||||| || ||||||||||||||| || ||||| | |||| ||||| || || Sbjct 215417 TGACTTGACATTATCAATGGTGTCCGAAGACTCAACTTCTAATGTAATAGTCTTGCCCGT 215358 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||| || ||||| | ||||| Sbjct 215357 CAAAGTCTTAACGAAGATCTGCAT 215334 >seq1483 Length=199378 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 ||||| || |||||||| | |||||| | ||||| ||||| ||||| || |||||||| Sbjct 28636 TTTTGGATGTTGTAATCTGAAAGAGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGATC 28695 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | ||||||||||| || || ||||| || ||||| || || || |||||| || ||| Sbjct 28696 AAACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTATCA 28755 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || ||||||||| || ||||| | |||| ||||| || || | || || ||||| Sbjct 28756 ATTGTGTCCGAAGACTCAACTTCCAATGTAATGGTCTTACCCGTAAGGGTCTTGACGAA 28814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109457235090638