Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq962 116 3e-20 seq291 104 2e-16 >seq962 Length=65715 Score = 116 bits (128), Expect = 3e-20 Identities = 384/592 (65%), Gaps = 4/592 (1%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || |||||||| ||| | |||||||| || ||||| ||| | | | | ||| | | Sbjct 59915 GCCATAGGTATCGATCTTGGAACCACCTACTCCTGTGTAGGTATCTATCGAGATGATCGA 59856 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 |||| ||||| ||||| || || || ||| |||| || || || | ||| | ||||| Sbjct 59855 ATTGAGATTATCGCCAACGACCAGGGAAACCGAACCACCCCTTCCTTCGTTGCCTTCACA 59796 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | | | || ||||| ||||| | |||| | | || || |||| Sbjct 59795 GATACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCCGCCAAC 59736 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCAGGC 550230 || | || || || || ||| | || ||| | ||||| | || | || ||||| Sbjct 59735 ACAGTCTTCGACGCAAAGCGTCTGATCGGACGTAAGTTCGCA-GACCAGGAAGTCCAGGC 59677 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC 550290 ||||||||||| | || ||| | | | | |||||| ||| | || | Sbjct 59676 TGATATGAAGCACTTTCCCTTCACCGTCCTCGACCGTGGTGGAAAGCCTGTCGTCGA-GA 59618 Query 550291 TACTCATGAAGGATCTGTTAAA-CAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 | | |||| | || ||||| ||||||| |||| || || ||| | || Sbjct 59617 TTGAGTTCAAGGGCGAGAAGAAGCAATTCACACCAGAGGAAATCTCTTCCATGATCTTGG 59558 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 | || |||| | | || ||| |||| ||||| | || | | || || | | Sbjct 59557 TCAAGATGAGAGAGACCGCCGAGGCTTACCTTGGTGGAACCGTCAACAACGCCGTCGTCA 59498 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || |||||||| |||| || |||||||||||||| || || || || || || | Sbjct 59497 CCGTCCCAGCATACTTTACCGATTCACAACGTCAAGCCACCAAGGACGCCGGTTTAATCG 59438 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 |||| || || |||||||| || ||||| || ||||| || || || ||||||| || | Sbjct 59437 CTGGTCTCAACGTTCTTCGAATCATCAACGAGCCTACCGCAGCCGCCATTGCATACGGTC 59378 Query 550530 TTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 | || || | ||| || | || || |||||||||||| ||| || Sbjct 59377 TCGACAAGAAGGTTGAGGGTGAGCGAAACGTTCTCATCTTTGATCTTGGTGG 59326 >seq291 Length=157447 Score = 104 bits (114), Expect = 2e-16 Identities = 116/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | || || || ||||| || || || |||||||||||||| || || |||| Sbjct 21915 ATGCCGTTGTCACAGTCCCTGCATACTTCAACGATTCACAACGTCAAGCCACCAAGGATG 21974 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| | ||||| ||||| || ||||| | | | || || || ||||||||||| | Sbjct 21975 CTGGTCAAATTGCCGGACTCAACGTTCTGAGAGTGGTTAACGAGCCAACTGCTGCTGCGC 22034 Query 550518 TTGCATATGGACTTGATAAACATAATGATCAAGA 550551 ||||||| |||||||| || || | || ||||| Sbjct 22035 TTGCATACGGACTTGAGAAGGATGAGGA-CAAGA 22067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029205355949860