Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq962 116 3e-20
seq291 104 2e-16
>seq962
Length=65715
Score = 116 bits (128), Expect = 3e-20
Identities = 384/592 (65%), Gaps = 4/592 (1%)
Strand=Plus/Minus
Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051
|| |||||||| ||| | |||||||| || ||||| ||| | | | | ||| | |
Sbjct 59915 GCCATAGGTATCGATCTTGGAACCACCTACTCCTGTGTAGGTATCTATCGAGATGATCGA 59856
Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111
|||| ||||| ||||| || || || ||| |||| || || || | ||| | |||||
Sbjct 59855 ATTGAGATTATCGCCAACGACCAGGGAAACCGAACCACCCCTTCCTTCGTTGCCTTCACA 59796
Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171
|| || || | | | | || ||||| ||||| | |||| | | || || ||||
Sbjct 59795 GATACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCCGCCAAC 59736
Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCAGGC 550230
|| | || || || || ||| | || ||| | ||||| | || | || |||||
Sbjct 59735 ACAGTCTTCGACGCAAAGCGTCTGATCGGACGTAAGTTCGCA-GACCAGGAAGTCCAGGC 59677
Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC 550290
||||||||||| | || ||| | | | | |||||| ||| | || |
Sbjct 59676 TGATATGAAGCACTTTCCCTTCACCGTCCTCGACCGTGGTGGAAAGCCTGTCGTCGA-GA 59618
Query 550291 TACTCATGAAGGATCTGTTAAA-CAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349
| | |||| | || ||||| ||||||| |||| || || ||| | ||
Sbjct 59617 TTGAGTTCAAGGGCGAGAAGAAGCAATTCACACCAGAGGAAATCTCTTCCATGATCTTGG 59558
Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409
| || |||| | | || ||| |||| ||||| | || | | || || | |
Sbjct 59557 TCAAGATGAGAGAGACCGCCGAGGCTTACCTTGGTGGAACCGTCAACAACGCCGTCGTCA 59498
Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469
| || |||||||| |||| || |||||||||||||| || || || || || || |
Sbjct 59497 CCGTCCCAGCATACTTTACCGATTCACAACGTCAAGCCACCAAGGACGCCGGTTTAATCG 59438
Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529
|||| || || |||||||| || ||||| || ||||| || || || ||||||| || |
Sbjct 59437 CTGGTCTCAACGTTCTTCGAATCATCAACGAGCCTACCGCAGCCGCCATTGCATACGGTC 59378
Query 550530 TTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581
| || || | ||| || | || || |||||||||||| ||| ||
Sbjct 59377 TCGACAAGAAGGTTGAGGGTGAGCGAAACGTTCTCATCTTTGATCTTGGTGG 59326
>seq291
Length=157447
Score = 104 bits (114), Expect = 2e-16
Identities = 116/154 (75%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || | || || || ||||| || || || |||||||||||||| || || ||||
Sbjct 21915 ATGCCGTTGTCACAGTCCCTGCATACTTCAACGATTCACAACGTCAAGCCACCAAGGATG 21974
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
|||| | ||||| ||||| || ||||| | | | || || || ||||||||||| |
Sbjct 21975 CTGGTCAAATTGCCGGACTCAACGTTCTGAGAGTGGTTAACGAGCCAACTGCTGCTGCGC 22034
Query 550518 TTGCATATGGACTTGATAAACATAATGATCAAGA 550551
||||||| |||||||| || || | || |||||
Sbjct 22035 TTGCATACGGACTTGAGAAGGATGAGGA-CAAGA 22067
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029205355949860
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |