Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq1406 120 2e-22
>seq1406
Length=252419
Score = 120 bits (132), Expect = 2e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| |||||||| || || || ||||| || ||||| |||| | |||| | |||| |||
Sbjct 215314 ACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGGCCATCCTCC 215255
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
|||||||| ||||| || || | |||||||| || || || || || || ||||| |||
Sbjct 215254 AATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATCCTGA 215195
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || ||| | || | ||| || || | || || || ||||||| ||| ||
Sbjct 215194 ATCTTCGACTTCACATTGTCGATAGTATCTGAAGACTCAACCTCGAGAGTGATCGTCTTT 215135
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| | || || || ||||| |||||
Sbjct 215134 CCGGTGAGGGTCTTGACGAATATTTGCAT 215106
Score = 105 bits (116), Expect = 5e-18
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 101279 TCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAAT 101338
|| ||||| || || |||||| || || | | |||| ||||||||||| || || ||
Sbjct 215524 TCCTTTTGGATGTTATAATCGCTGAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAA 215465
Query 101339 ATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATT 101398
||||| ||||||||||| || || || || || ||||| || || ||| || ||| |
Sbjct 215464 ATCAATCGCTGTTGATCTGGTGGGATACCCTCCTTATCCTGGATCTTTGACTTGACATTA 215405
Query 101399 TCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACA 101458
|| | ||||| || | || ||||| | || | || ||||| || ||||| || ||
Sbjct 215404 TCAATGGTGTCCGAAGACTCAACTTCTAATGTAATAGTCTTGCCCGTCAAAGTCTTAACG 215345
Query 101459 AATATCTGCAT 101469
|| ||||||||
Sbjct 215344 AAGATCTGCAT 215334
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396270121991898
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |