Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq1406 100 2e-16
>seq1406
Length=252419
Score = 100 bits (110), Expect = 2e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | |||||| || | |||||||| ||||| || || ||||| || | ||
Sbjct 215551 AGGCGAAGCACCAAGTGCAAAGTGCTCTCCTTTTGGATGTTATAATCGCTGAGTGTACGG 215492
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || ||||| ||||| ||||| || |||| |||||||||||| | || | ||||||
Sbjct 215491 CCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGGGATACCCTCC 215432
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
|| || |||||| || ||| | | | | || || | ||| || || | |||
Sbjct 215431 TTATCCTGGATCTTTGACTTGACATTATCAATGGTGTCCGAAGACTCAACTTCTAATGTA 215372
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || ||||||||||| || || || ||||||||
Sbjct 215371 ATAGTCTTGCCCGTCAAAGTCTTAACGAAGATCTGCAT 215334
Score = 89.7 bits (98), Expect = 4e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
||||| | || || | |||| || || ||| ||| || || || ||||||||||||
Sbjct 214821 CCGCCACGAAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAT 214762
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
||| | || |||| || | |||||| |||||||| |||| || || ||||| | ||||
Sbjct 214761 AGAGTACGTCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAAACGTTGCTGATCTGGGGGA 214702
Query 48660 ACGCCCTCCTTGTC 48673
| |||||||||||
Sbjct 214701 ATTCCCTCCTTGTC 214688
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
|||||||| || ||| ||| ||||| || ||||| || || | |||| | || |||
Sbjct 215314 ACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGGCCATCCTCC 215255
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
|| ||||| || || || || ||||||||||| || | || | |||||||| || |
Sbjct 215254 AATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATCCTGA 215195
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
||||| || ||| | | || ||||| | ||| ||||| | || ||||| |||
Sbjct 215194 ATCTTCGACTTCACATTGTCGATAGTATCTGAAGACTCAACCTCGAGAGTGATCGTCTTT 215135
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || | || || || || || |||||
Sbjct 215134 CCGGTGAGGGTCTTGACGAATATTTGCAT 215106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380929642451622
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |