Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq908 111 3e-19 seq843 109 1e-18 >seq908 Length=77775 Score = 111 bits (122), Expect = 3e-19 Identities = 344/522 (66%), Gaps = 23/522 (4%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 ||||| || | || | ||||| |||||||| ||||| || | | |||||||||||| Sbjct 45587 TGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATGTTCTCC 45528 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCAG 47958 || ||| ||| ||||||| || || ||| | ||| ||| | || || Sbjct 45527 ATAAAGTCGAATGGGTTGGCAACCTTGTAAACCT-TCTCATTGCCGAGGGAAAGGAGGAG 45469 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 |||| |||||| |||| ||||||| ||| ||| || ||||||||| | || | Sbjct 45468 ACGATCAGCGACGAACTCAATGTATTGCTTCATCAGGTTGGCGTTCATGCCGAGAAGTG- 45410 Query 48019 CACGGGCAA-AGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||| | || ||||| || | ||||| | ||| |||| || || || | | | Sbjct 45409 CACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGA-CG 45351 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCAT------AGAGCATGC 48131 || | ||||| || || ||| || | ||||| || |||| | || Sbjct 45350 GCCT------GGACTGC-AGCCTTGCTTGGGC-GATGCTTCAAATGGGAGAAGAGAAGGC 45299 Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191 | || ||||| |||| | || || || ||| ||| ||| ||||||||||| |||| Sbjct 45298 ATGCGAAGTCGGTGTGGAGACCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTAAGAC 45239 Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251 ||| ||||| || | | || | |||||| || | |||||||| ||| |||||||| Sbjct 45238 CAGCCATGAGGCCACGTTTCTTCAACCAGAAGATGGAGGCGAAAGAACCACTGAAGAAGA 45179 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311 | ||||| || || ||||| || || | | | || | | | ||||||| || Sbjct 45178 TACCCTCAACAGCGGCGAAGGCAACAAGACGTTGGGCAAAGGTGGACTCCTTGTCTTGGA 45119 Query 48312 TCCA--GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 |||| ||| | ||||| || ||||||||||| ||||| || Sbjct 45118 TCCATCGGACA--GCCCAATCAGCCTTCTTCTTAATGCAGGG 45079 >seq843 Length=104768 Score = 109 bits (120), Expect = 1e-18 Identities = 408/636 (64%), Gaps = 14/636 (2%) Strand=Plus/Minus Query 213495 GCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGG 213554 |||| |||||||| || ||||| | | | |||||| | ||| || ||||||| | Sbjct 64019 GCCAAATTGCAAACAGCGACCTCATCTGGTGCACAGTACTCGACGATTTCAGTGCACAAG 63960 Query 213555 TTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTG 213614 ||| || ||||||||| || || |||| ||||| |||| |||| || ||||||| Sbjct 63959 TTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTG 63900 Query 213615 TAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTAC 213674 || |||||| | ||| |||||||| || | | | || || | ||| || | Sbjct 63899 TAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCAAGGATAGAGTACCAAAGCTTT 63840 Query 213675 CTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCG 213734 ||| |||| | | || | | | | || |||||| | || || | | | Sbjct 63839 TGGGCTTTGATG---CTCTTGCGACCCTTGCCCTCAGACTCGTATTTCTCATACAACGCT 63783 Query 213735 TTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTC 213794 | ||| |||| || |||| | ||| || ||||| || ||||| | || Sbjct 63782 TCGAACTCGTCACCGTAGACATCGGCCAAACCAGGACACTCGTTAGGGCACATCAATGTC 63723 Query 213795 CAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAAC 213854 ||||| | | | || | || |||||| || || || | ||| || ||| ||| Sbjct 63722 CAGTCGAGATTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGAGCGTAGAAG 63663 Query 213855 AGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAG 213914 || || | || | ||| ||| |||| ||| || || || || || || || || Sbjct 63662 AGATCACGGGCACGAACCTCCTCCTTTCCATGGTTCTTTCGGAGGTCGAGGAACTCGAAA 63603 Query 213915 ATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCC 213971 | || |||||||| ||||| | ||||||||| || || || || | |||| || || Sbjct 63602 ACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACCAGGACGCTTGTTACCACCT 63543 Query 213972 TGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGAC 214031 || || || ||||| ||||||| | | || | || || | |||||||| Sbjct 63542 TGATCAACATATCTGGCGGTGTTGTTGAAAACTCTGAGCATAGGAACGATTCCGTTGGAG 63483 Query 214032 TGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC----TCAGGTTGCTCATGGAGAG 214087 | |||||| || || || ||||| | ||||| || | || | || ||| |||| Sbjct 63482 TTTCCGTTAGTACCGGCGATATAAGCGCCGGTCGCACGGATTCTG--TGAACATTGAGA- 63426 Query 214088 CCCTATGCCACCGGCGTACTTGGAGATCATGGCGCA 214123 || || ||||| || | ||| || ||||||||||| Sbjct 63425 -CCGATACCACCAGCATTCTTTGAAATCATGGCGCA 63391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931512841909760