Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq908 109 1e-18
>seq908
Length=77775
Score = 109 bits (120), Expect = 1e-18
Identities = 166/231 (72%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTAC 25868
||| |||| |||| |||||| ||||| | |||||| | || || | | | ||
Sbjct 45079 CCCTGCATTAAGAAGAAGGCTGATTGGGCTGTCCGATGGATCCA-AGACAAGGAGTCCAC 45137
Query 25869 GTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928
|||| | | || || || ||||| || ||||| ||||| ||||| ||||| ||||| ||
Sbjct 45138 CTTTGCCCAACGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTT 45197
Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACG 25987
|| ||||||||||| | ||| | | | || | |||| | || || ||| |||||||
Sbjct 45198 CGCCTCCATCTTCTGGTTGAAG-AAACGTGGCCTCATGGCTGGTCTTACCTTCTCCAACG 45256
Query 25988 AGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038
|||| ||| | | || ||||||||||||| || || || ||||| ||||
Sbjct 45257 AGCTGATCTCCCGTGATGAGGGTCTCCACACCGACTTCGCATGCCTTCTCT 45307
Score = 105 bits (116), Expect = 1e-17
Identities = 180/260 (69%), Gaps = 7/260 (3%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| | |||||||||||||| || ||| |||||| |||||||||||||||||
Sbjct 44690 ATCTGGCAAATGTACAAGAAGGCCGAAGCTTCATTCTGGACTGCCGAAGAGATTGATCTA 44749
Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591
||||||| | ||| |||| || |||| | | | ||||||| | || ||
Sbjct 44750 TCCAAGGATCTCCACGACTGGAACAACAAGCTCAA--CGATGACGAGCGTTACTTCATCT 44807
Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651
|||| | || ||||| || |||||||| || || || |||||||| || ||||
Sbjct 44808 CCCACGTCCTCGCTTTCTTCGCTGCCTCTGACGGGATTGTCAACGAGAACCTCCTCGAGC 44867
Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711
| |||| ||| ||||| || | |||||| | |||||||| ||||| || |
Sbjct 44868 GCTTCAGCAGTGAAGTCCAAATCCCCGAGGCCCGATTCTTCTACGGATTCCAAATCATGA 44927
Query 25712 TCGAAAATGTGCACTCTGAG 25731
| || || | |||||||||
Sbjct 44928 TGGAGAACATCCACTCTGAG 44947
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928824899500160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |