Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq908 109 1e-18 >seq908 Length=77775 Score = 109 bits (120), Expect = 1e-18 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTAC 25868 ||| |||| |||| |||||| ||||| | |||||| | || || | | | || Sbjct 45079 CCCTGCATTAAGAAGAAGGCTGATTGGGCTGTCCGATGGATCCA-AGACAAGGAGTCCAC 45137 Query 25869 GTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 |||| | | || || || ||||| || ||||| ||||| ||||| ||||| ||||| || Sbjct 45138 CTTTGCCCAACGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTT 45197 Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACG 25987 || ||||||||||| | ||| | | | || | |||| | || || ||| ||||||| Sbjct 45198 CGCCTCCATCTTCTGGTTGAAG-AAACGTGGCCTCATGGCTGGTCTTACCTTCTCCAACG 45256 Query 25988 AGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038 |||| ||| | | || ||||||||||||| || || || ||||| |||| Sbjct 45257 AGCTGATCTCCCGTGATGAGGGTCTCCACACCGACTTCGCATGCCTTCTCT 45307 Score = 105 bits (116), Expect = 1e-17 Identities = 180/260 (69%), Gaps = 7/260 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| || ||| |||||| ||||||||||||||||| Sbjct 44690 ATCTGGCAAATGTACAAGAAGGCCGAAGCTTCATTCTGGACTGCCGAAGAGATTGATCTA 44749 Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 ||||||| | ||| |||| || |||| | | | ||||||| | || || Sbjct 44750 TCCAAGGATCTCCACGACTGGAACAACAAGCTCAA--CGATGACGAGCGTTACTTCATCT 44807 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 |||| | || ||||| || |||||||| || || || |||||||| || |||| Sbjct 44808 CCCACGTCCTCGCTTTCTTCGCTGCCTCTGACGGGATTGTCAACGAGAACCTCCTCGAGC 44867 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 | |||| ||| ||||| || | |||||| | |||||||| ||||| || | Sbjct 44868 GCTTCAGCAGTGAAGTCCAAATCCCCGAGGCCCGATTCTTCTACGGATTCCAAATCATGA 44927 Query 25712 TCGAAAATGTGCACTCTGAG 25731 | || || | ||||||||| Sbjct 44928 TGGAGAACATCCACTCTGAG 44947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928824899500160