Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq962 114 8e-20 seq1483 86.0 4e-11 seq900 86.0 4e-11 >seq962 Length=65715 Score = 114 bits (126), Expect = 8e-20 Identities = 387/596 (65%), Gaps = 10/596 (2%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 ||| || ||||| ||| | ||||| || ||| ||||||| | | | | | ||| | Sbjct 59916 TGCCATAGGTATCGATCTTGGAACCACCTACTCCTGTGTAGGTATCTATCGAGATGATCG 59857 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 | | || || || ||||| ||||| || || |||| || || || | ||| | || || Sbjct 59856 AATTGAGATTATCGCCAACGACCAGGGAAACCGAACCACCCCTTCCTTCGTTGCCTTCAC 59797 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || || || | ||| || |||||||| || || | |||| || || || | || Sbjct 59796 AGATACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCCGCCAA 59737 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT--GTCCAA 474565 || | || || || || | |||| || ||||| || | || ||| ||||| Sbjct 59736 CACAGTCTTCGACGCAAAGCGTCTGATCGGACGTAAGTTCGCAGA--CCAGGAAGTCCAG 59679 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--AG 474623 |||||||| || | || || | || | | |||||| || || | || Sbjct 59678 GCTGATATGAAGCACTTTCCCTTCACCGTCCTCGACCGTGGTGGAAAGCCTGTCGTCGAG 59619 Query 474624 AAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683 | | | || | || || | || ||||| |||| || |||| ||||| ||| | | Sbjct 59618 ATTGAGTTCAAG--GGCGAGAAGAAGCAATTCACACCAGAGGAAATCTCTTCCATGATCT 59561 Query 474684 TAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTA 474742 | | ||| |||| | | ||||| ||| | || ||||| | || | | || || Sbjct 59560 TGGTCAAGATGAGAGAGACCGCCGAGG-CTTACCTTGGTGGAACCGTCAACAACGCCGTC 59502 Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 | || || |||||||| |||| ||||| ||||||||||| || || || || || | Sbjct 59501 GTCACCGTCCCAGCATACTTTACCGATTCACAACGTCAAGCCACCAAGGACGCCGGTTTA 59442 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 || || ||||| || ||| | || || || || || || || |||||||| |||| || Sbjct 59441 ATCGCTGGTCTCAACGTTCTTCGAATCATCAACGAGCCTACCGCAGCCGCCATTGCATAC 59382 Query 474863 GGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGG 474918 ||||| || ||||| ||| || ||| ||| | ||||||||| ||| || Sbjct 59381 GGTCTCGACAAGAAGGTTGAGGGTGAGCGAAACGTTCTCATCTTTGATCTTGGTGG 59326 >seq1483 Length=199378 Score = 86.0 bits (94), Expect = 4e-11 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||| | ||||| | ||| || |||||||||||||| || || | ||||||| Sbjct 28645 TTGTAATCTGAAAGAGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGT 28704 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || || || || || |||||||| || ||||| |||||| ||||| || || Sbjct 28705 TGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTATCAATTGTGTCC 28764 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAA 480763 | | | || || ||| ||||| || ||||| || || ||||| ||||| Sbjct 28765 GAAGACTCAACTTCCAA-TGTAATGGTCTTACCCGTAAGGGTCTTGACGAA 28814 >seq900 Length=80126 Score = 86.0 bits (94), Expect = 4e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 476021 ATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTT 476080 ||||| ||||||| || ||||||| | |||||||| || || |||| |||| || Sbjct 71429 ATCCAGGTCTTTGAGGGAGAAAGAACTATGACTAAAGACAACAATCAACTCGGAAAGTTC 71370 Query 476081 AATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGAT 476140 | ||| ||||| || ||||| || |||||||||||||||| || || |||| || Sbjct 71369 GAGCTTACCGGTATCCCACCTGCGCCACGAGGAGTTCCTCAAATCGAGGTCTCTTTCGAG 71310 Query 476141 ATTGATGCAAATGGTATTCTTAATGTTACTGC 476172 |||| || || || || | || ||||| || Sbjct 71309 CTTGACGCCAACGGAATCTTAAAGGTTACCGC 71278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268105678223672