Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq962 114 8e-20
seq1483 86.0 4e-11
seq900 86.0 4e-11
>seq962
Length=65715
Score = 114 bits (126), Expect = 8e-20
Identities = 387/596 (65%), Gaps = 10/596 (2%)
Strand=Plus/Minus
Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387
||| || ||||| ||| | ||||| || ||| ||||||| | | | | | ||| |
Sbjct 59916 TGCCATAGGTATCGATCTTGGAACCACCTACTCCTGTGTAGGTATCTATCGAGATGATCG 59857
Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447
| | || || || ||||| ||||| || || |||| || || || | ||| | || ||
Sbjct 59856 AATTGAGATTATCGCCAACGACCAGGGAAACCGAACCACCCCTTCCTTCGTTGCCTTCAC 59797
Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507
|| || || | ||| || |||||||| || || | |||| || || || | ||
Sbjct 59796 AGATACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCCGCCAA 59737
Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT--GTCCAA 474565
|| | || || || || | |||| || ||||| || | || ||| |||||
Sbjct 59736 CACAGTCTTCGACGCAAAGCGTCTGATCGGACGTAAGTTCGCAGA--CCAGGAAGTCCAG 59679
Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--AG 474623
|||||||| || | || || | || | | |||||| || || | ||
Sbjct 59678 GCTGATATGAAGCACTTTCCCTTCACCGTCCTCGACCGTGGTGGAAAGCCTGTCGTCGAG 59619
Query 474624 AAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683
| | | || | || || | || ||||| |||| || |||| ||||| ||| | |
Sbjct 59618 ATTGAGTTCAAG--GGCGAGAAGAAGCAATTCACACCAGAGGAAATCTCTTCCATGATCT 59561
Query 474684 TAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTA 474742
| | ||| |||| | | ||||| ||| | || ||||| | || | | || ||
Sbjct 59560 TGGTCAAGATGAGAGAGACCGCCGAGG-CTTACCTTGGTGGAACCGTCAACAACGCCGTC 59502
Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802
| || || |||||||| |||| ||||| ||||||||||| || || || || || |
Sbjct 59501 GTCACCGTCCCAGCATACTTTACCGATTCACAACGTCAAGCCACCAAGGACGCCGGTTTA 59442
Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862
|| || ||||| || ||| | || || || || || || || |||||||| |||| ||
Sbjct 59441 ATCGCTGGTCTCAACGTTCTTCGAATCATCAACGAGCCTACCGCAGCCGCCATTGCATAC 59382
Query 474863 GGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGG 474918
||||| || ||||| ||| || ||| ||| | ||||||||| ||| ||
Sbjct 59381 GGTCTCGACAAGAAGGTTGAGGGTGAGCGAAACGTTCTCATCTTTGATCTTGGTGG 59326
>seq1483
Length=199378
Score = 86.0 bits (94), Expect = 4e-11
Identities = 123/171 (72%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653
|| ||||| | ||||| | ||| || |||||||||||||| || || | |||||||
Sbjct 28645 TTGTAATCTGAAAGAGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGT 28704
Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713
|| || || || || || |||||||| || ||||| |||||| ||||| || ||
Sbjct 28705 TGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTATCAATTGTGTCC 28764
Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAA 480763
| | | || || ||| ||||| || ||||| || || ||||| |||||
Sbjct 28765 GAAGACTCAACTTCCAA-TGTAATGGTCTTACCCGTAAGGGTCTTGACGAA 28814
>seq900
Length=80126
Score = 86.0 bits (94), Expect = 4e-11
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 476021 ATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTT 476080
||||| ||||||| || ||||||| | |||||||| || || |||| |||| ||
Sbjct 71429 ATCCAGGTCTTTGAGGGAGAAAGAACTATGACTAAAGACAACAATCAACTCGGAAAGTTC 71370
Query 476081 AATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGAT 476140
| ||| ||||| || ||||| || |||||||||||||||| || || |||| ||
Sbjct 71369 GAGCTTACCGGTATCCCACCTGCGCCACGAGGAGTTCCTCAAATCGAGGTCTCTTTCGAG 71310
Query 476141 ATTGATGCAAATGGTATTCTTAATGTTACTGC 476172
|||| || || || || | || ||||| ||
Sbjct 71309 CTTGACGCCAACGGAATCTTAAAGGTTACCGC 71278
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268105678223672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |