Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq843 98.7 5e-16
>seq843
Length=104768
Score = 98.7 bits (108), Expect = 5e-16
Identities = 241/363 (66%), Gaps = 2/363 (1%)
Strand=Plus/Minus
Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981
||||| || ||| || | |||||||||||| | || || || | ||| | || |
Sbjct 63707 TCAACACGCTTCATGAAGAGATCTGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGA 63648
Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCAT 26041
| || || ||||| || |||||| || || | ||| || |||| ||| | |||||||
Sbjct 63647 ACCTCCTCCTTTCCATGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCAT 63588
Query 26042 GGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTT 26101
|| || | ||||| || ||| ||| | || ||||||||||| || |||||
Sbjct 63587 GGCTCAAGGTAGATGGCGAAAGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTG 63528
Query 26102 GCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTA 26161
|| || | ||||||||| | | ||| ||||| | ||| | || |||||| || |
Sbjct 63527 GCGGTGTTGTTGAAAACTCTGAGCATAGGAACGATTCCGTTGGAGTTTCCGTTAGTACCG 63468
Query 26162 TGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCAT 26221
|| | | || |||| | || |||| ||| | |||||| ||||||||
Sbjct 63467 GCGATATAAGCGCCGGTCGCACGGATTCTGTGAACATTGAGACCGATACCACCAGCATTC 63408
Query 26222 TTTGAAATAGCTGCAC-AATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTT 26280
|||||||| || | ||||| ||| || ||| |||| || | ||||| || | ||
Sbjct 63407 TTTGAAATCATGGCGCAAATCTTTAAC-GTGTCGTAAATACCATCAATGCTGTCCTCCTT 63349
Query 26281 CAT 26283
|||
Sbjct 63348 CAT 63346
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 253034714152550
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |