Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq843 98.7 5e-16 >seq843 Length=104768 Score = 98.7 bits (108), Expect = 5e-16 Identities = 241/363 (66%), Gaps = 2/363 (1%) Strand=Plus/Minus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 ||||| || ||| || | |||||||||||| | || || || | ||| | || | Sbjct 63707 TCAACACGCTTCATGAAGAGATCTGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGA 63648 Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCAT 26041 | || || ||||| || |||||| || || | ||| || |||| ||| | ||||||| Sbjct 63647 ACCTCCTCCTTTCCATGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCAT 63588 Query 26042 GGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTT 26101 || || | ||||| || ||| ||| | || ||||||||||| || ||||| Sbjct 63587 GGCTCAAGGTAGATGGCGAAAGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTG 63528 Query 26102 GCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTA 26161 || || | ||||||||| | | ||| ||||| | ||| | || |||||| || | Sbjct 63527 GCGGTGTTGTTGAAAACTCTGAGCATAGGAACGATTCCGTTGGAGTTTCCGTTAGTACCG 63468 Query 26162 TGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCAT 26221 || | | || |||| | || |||| ||| | |||||| |||||||| Sbjct 63467 GCGATATAAGCGCCGGTCGCACGGATTCTGTGAACATTGAGACCGATACCACCAGCATTC 63408 Query 26222 TTTGAAATAGCTGCAC-AATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTT 26280 |||||||| || | ||||| ||| || ||| |||| || | ||||| || | || Sbjct 63407 TTTGAAATCATGGCGCAAATCTTTAAC-GTGTCGTAAATACCATCAATGCTGTCCTCCTT 63349 Query 26281 CAT 26283 ||| Sbjct 63348 CAT 63346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253034714152550