Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1395 114 1e-20 >seq1395 Length=211398 Score = 114 bits (126), Expect = 1e-20 Identities = 193/275 (70%), Gaps = 12/275 (4%) Strand=Plus/Plus Query 139272 CCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATG 139331 || ||||| | || ||||| || ||||||||| || | || ||||||||||| | Sbjct 85394 CCGTGATAGACAGCGTAGAAAGCACTCATATTTGCAAGTAACGCCTGTGCTGTGCATACA 85453 Query 139332 TTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTAT 139391 || ||||| || || ||||||| ||||| ||||||| ||| || ||||| ||||| || Sbjct 85454 TTGCTGGTAGCCTTTTCTCTTCGGATATGTTGCTCTCGAGTCTGAAGTGCCAATCT-CAT 85512 Query 139392 GCAGGATTGCCTTC---GCTGTCCACTGACTGACCTACAAT---TCTGCCAGGTATCTTT 139445 | ||| || | || || ||| | || |||| | || || || || Sbjct 85513 --CGCCTTGTCTCCAAGTCTATCTTTTGA---AACTCCAATGAGGCGTCCTGGAATTTTC 85567 Query 139446 CTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCATAGGA 139505 | |||||| ||||| | |||||||| |||||||||||||| || ||||| | |||| Sbjct 85568 CGCTTATATTTGTCGCTAACGGCAAAGAAAGCAGCATGAGGACCACCATATCCAAAAGGA 85627 Query 139506 ATACCAAACCTTTGCATACTACCTACAGCAATATC 139540 | |||||| ||||| | |||| | |||||||| Sbjct 85628 ACACCAAATCTTTGGGCATTACCAAATGCAATATC 85662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578985994959280