Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq843 248 1e-60 seq908 134 2e-26 seq927 107 2e-18 seq567 84.2 3e-11 >seq843 Length=104768 Score = 248 bits (274), Expect = 1e-60 Identities = 1173/1824 (64%), Gaps = 71/1824 (4%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 ||||| ||| |||| ||||| ||| || | ||||| | || |||||||||| || Sbjct 63112 TACTTCGGTTTCAAGACCCTCGAGC-GATCATATCTCCTCCGCCTCGATGGCAAGATCTG 63170 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 ||| |||||| | ||| | ||||| || || |||| || ||||| || || || || Sbjct 63171 CGAACGTCCACAGCATATGATTATGCGTGTTGCGGTCGGAATTCACGGTGAGGATATCGA 63230 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCA 75322 ||| | | ||||| ||| || ||||||| ||| || |||| ||||| | ||| Sbjct 63231 GGCTGCCATCGAGACCTACAACTTGATGTCCAGCAAA-TAC-TTCACCCACGCCTCCCCA 63288 Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382 ||||||||| ||||| |||||| | || | || ||||||||||||| || Sbjct 63289 ACCCTCTTCGCAGCTGGCACACCACAGGCACAACTTTCATCCTGCTTCCTTATCGACATG 63348 Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAA 75440 ||||||||| || | ||||| || | || ||| || | ||||| | || |||| Sbjct 63349 AAGGAGGACAGCATTGATGGTATTTACGACACG-TTAAAGATT-TGCGCCATGATTTCAA 63406 Query 75441 AGTGGGCTGGGGGTATTGGG----ATGCACATCCATGAT--GTGAGAGCCAATAAATCTC 75494 || ||||| ||||| || ||| || || || ||| || | | | Sbjct 63407 AGAATGCTGGTGGTATCGGTCTCAATGTTCA--CAGAATCCGTGCGACCGG------CGC 63458 Query 75495 GTAT-TCGGGGG-ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAA 75552 ||| ||| || || || || | || | || || |||| ||||| | || || || Sbjct 63459 TTATATCGCCGGTACTAACGGAAACTCCAACGGAATCGTTCCTATGCTCAGAGTTTTCAA 63518 Query 75553 CGCCACAGCGCGCTATGTAAATCAAGCGGGGCGTCGCAAGGG-----GTCCAT-CGCGGT 75606 | ||| || | ||||| |||||| || | |||| | || | | ||| | Sbjct 63519 CAACACCGCCAGATATGTTGATCAAGGTGG---TAACAAGCGTCCTGGTGCTTTCGCCAT 63575 Query 75607 CTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGG 75666 |||| | || |||||||| |||||| | | |||||||| || | ||| ||||| || Sbjct 63576 CTACCTTGAGCCATGGCACGCCGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCATGG 63635 Query 75667 TGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCAT 75726 | || |||| ||| | |||||||| | | || ||||||||||| || ||||| Sbjct 63636 AAAGGAGGAGGTTCGTGCCCGTGATCTCTTCTACGCTCTCTGGATTCCAGATCTCTTCAT 63695 Query 75727 GAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCT 75786 |||||| ||||| || | | ||| | | | || || || || || ||| | Sbjct 63696 GAAGCGTGTTGAAAAGAATCTCGACTGGACATTGATGTGCCCTAACGAGTGTCCTGGTTT 63755 Query 75787 CTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTA- 75845 |||| | ||||| ||||| ||||| | || || || || ||||| | Sbjct 63756 GGCCGATGTCTACGGTGACGAGTTCGAAGCGTTGTATGAGAAATACGAGTCTGAGGGCAA 63815 Query 75846 GAGCCAATGCGACTGTACCA--GCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGAC 75903 | | | || | | | || ||| | ||||| | |||| || | | || || Sbjct 63816 GGGTC---GCAAGAGCATCAAAGCCCAAAAGCTTTGGTACTCTATCCTTGAGGCTCAAAC 63872 Query 75904 GGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAA 75963 ||||| |||| || | |||||||||||||||||||| ||| ||||| |||||||| Sbjct 63873 TGAGACCGGAAACCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGCAACCAAAA 63932 Query 75964 GAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAA 76023 |||| | || || ||| ||||| || | ||||| ||||| | |||||| | Sbjct 63933 GAATCTCGGTACCATCCGAAGCTCCAACTTGTGCACTGAAATCGTCGAGTACTGTGCACC 63992 Query 76024 GGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGA 76083 |||||| |||||||||||||||||||| | || || |||| ||||| |||| | Sbjct 63993 AGATGAGGTCGCTGTTTGCAATTTGGCATCGCTTGCTCTCCCAACCTATGTTGATGAGAA 64052 Query 76084 GACTCGCACTTTTGATTATGAAAAACTTCATGAAATC-ACAAAGATTGTTACCAAAAATC 76142 ||| ||||| ||| | |||| ||||| || || | ||| |||| ||| || Sbjct 64053 GACCGCCACTTATGACTTCCAAAAGCTTCACGAGGTCTGCCAAG-TTGTCGTCAAGAACT 64111 Query 76143 TAAACCGAGTCATTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATA 76199 | || | || || || | || || || |||| || ||||| ||| Sbjct 64112 TGAATAAGATTATCGATGTCAACTACTACCCGGTTCCTGAG---GCAAGAAAGAGCAATT 64168 Query 76200 TGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATT-TATTTTGTGC 76258 | || ||||||||||||| | | |||||||||||||| || |||| || | | | | Sbjct 64169 TCCGTCACAGACCTATTGCTCTCGGTGTTCAAGGTCTTGCTGATGCCTTCTTGGCTCTTC 64228 Query 76259 CGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATG 76318 || | | || || || || |||||| | | || | || || || ||||| Sbjct 64229 GTCTTC-CTTTCGAATCCCCGGAGGCCAAGCACCTCAACATCCAAATTTTCGAGACCATT 64287 Query 76319 TATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACA 76378 || ||||| | || || || ||||| | || ||| | |||||||| Sbjct 64288 TACCACGCTGCTTTGACTGCTTCCATGGAGTTGGCAAAGATTCATGGTCCATATGAGACT 64347 Query 76379 TTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACC 76438 | | | || || || || || | || | ||| || | ||| ||||||| || | ||| Sbjct 64348 TATCAAGGCTCGCCTGCCTCTAAGGGCGAGCTCCAATATGACATGTGGG-GTGTCACACC 64406 Query 76439 AA--GCTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTA 76496 | | || | || |||| | | ||| ||| ||| | | ||| | |||| Sbjct 64407 TACCGATC-TTTGGGATTGGGCTAGCTTGAAGCAACAGATCTCTCAACACGGTATCCGTA 64465 Query 76497 ACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAAT 76555 ||||| | | | || || |||||||||||| ||| |||| |||||| | ||| Sbjct 64466 ACAGTTTGCTCGTCGCTCCTATGCCAACAGCCAGTACCAGTCAAATTCTTGGAT-TTAAC 64524 Query 76556 GAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTT 76615 || ||||| || ||||| || | ||||||||| || | ||| || || || || Sbjct 64525 GAGTGCTTCGAGCCATATACCTCCAACATCTACTCTCGACGTGTCCTTGCTGGAGAATTC 64584 Query 76616 GTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGAT 76675 |||||||| || |||| || ||| | || || || |||||| | | Sbjct 64585 CAAGTTGTCAACCCATGGCTTCTCAAGGATCTCGTCGATATGGGACTTTGGTCCGACAAC 64644 Query 76676 ATGAAGGA---TCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCC 76731 |||||| | | ||| || ||| ||||| || || |||||| | || | ||||| Sbjct 64645 ATGAAGAACCGTATCATTGCTGA----TGGTGGATCAATCCAAAATGTTCCAAACATCCC 64700 Query 76732 AGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAG--ATGAAAGATGTCATT 76789 | |||||||||| ||| ||| || || ||||| ||| | | | | | || | Sbjct 64701 GGCTGATATCAAGGCTCTTTACAAGACCGTTTGGGAGATCTCGCAACGTACCA--TCGTC 64758 Query 76790 GACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATG 76849 | ||||| || || |||||| |||||||||||| |||| ||||| | |||| Sbjct 64759 CAGATGGCTGCCGACCGTGGTGCATTCATTGATCAATCTCAATCAATGAACATCCACATG 64818 Query 76850 GAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATAT-GTACGCGTGGAAACAGGGGCT 76908 | ||||| ||| ||| || | ||||||| | | | || ||||| | ||| || Sbjct 64819 AAGGACCCAACCATGGGTAAGATCACCAGTATGCATTTCGCAGGC-TGGAAGCTGGGTCT 64877 Query 76909 CAAAACCGGAATGTACTATCTCCG 76932 ||| || ||||||||||||||||| Sbjct 64878 CAAGACTGGAATGTACTATCTCCG 64901 >seq908 Length=77775 Score = 134 bits (148), Expect = 2e-26 Identities = 338/508 (67%), Gaps = 12/508 (2%) Strand=Plus/Plus Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCG 65066 || || || ||| |||||||||| | ||||| | |||| | | |||| | || Sbjct 45076 GTTCCCTGCATTAAGAAGAAGGCTGATTGGGCTGTCCGATGGATCCAAGACAAGGAGTC- 45134 Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 | |||| ||| | || ||| |||| || || ||| ||||||||||||||| || || Sbjct 45135 CACCTTTGCCCAACGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGTTC 45194 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 ||| | | || | ||||||||||| || || |||||| | || || |||||| || Sbjct 45195 TTTCGCCTCCATCTTCTGGTTGAAGAAACGTGGCCTCATGGCTGGTCTTACCTTCTCCAA 45254 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTT----TGCCGTGGAGCTCTTCA 65242 || || || ||||| ||||||||||||||| || || |||| | |||||| Sbjct 45255 CGAGCTGATCTCCCGTGATGAGGGTCTCCACACCGACTTCGCATGCCTT----CTCTTCT 45310 Query 65243 AGACTTTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTG 65302 |||| || | || | | | | |||| ||| || | | ||||| |||| Sbjct 45311 CCCATTTGAAGCATCGCCCAAGCAAGGCTGCAGTCCAGGCCGTCATCACCGAGGCTGTTG 45370 Query 65303 AGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTG 65362 |||||||| ||| |||| | || || || || ||| || |||| |||||| | Sbjct 45371 AGATTGAGCAAGAGTTCTTGACTGAGGCTCTTCCTTGTGCACTTCTCGGCATGAACGCCA 45430 Query 65363 AGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGG-GGTG 65421 | |||| | |||||||||| || | |||||||||||| | || || Sbjct 45431 ACCTGATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTCCTCCTTTCCCTCGGCAATG 45490 Query 65422 CCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGG 65481 | ||| || | || ||||| ||||||||||| ||||| ||||| || Sbjct 45491 AGA-AGGTTTACAAGGTTGCCAACCCATTCGACTTTATGGAGAACATCTCCCTTGCCGGA 45549 Query 65482 AAGACCAACTTCTTTGAGAAGCGAGTTG 65509 |||||||||||||| |||||||| |||| Sbjct 45550 AAGACCAACTTCTTCGAGAAGCGTGTTG 45577 >seq927 Length=373674 Score = 107 bits (118), Expect = 2e-18 Identities = 221/323 (68%), Gaps = 18/323 (6%) Strand=Plus/Minus Query 175186 TTCAGTGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATT-GTGGATTT 175244 |||| ||||||| ||| || |||| ||||| |||| | | | | ||| || || Sbjct 176138 TTCAAGGATGTTGCGGGTATGGACGAAGCCAA-GATGGAGATTATGGAATTCGTTTCATT 176080 Query 175245 TCTCAAGCAACCCGAGAGATATTTTGGAAGT---GGTGCCAAGATCCCCCGAGGCGCCCT 175301 ||| ||| ||| ||| || | | ||| ||||| |||||||| ||||| ||| | Sbjct 176079 TCTAAAGACACCTGAGCAAT---TCGAAAGATTGGGTGCTAAGATCCCTCGAGGAGCCAT 176023 Query 175302 TCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATC 175361 || | ||| || ||||| || ||||| | || || |||| || || ||||| Sbjct 176022 CCTTTCTGGTCCACCTGGTACCGGTAAGACTTTACTAGCAAAGGCCACAGCCGGAGAATC 175963 Query 175362 AAATGTCCCATTCATC-----CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416 ||| || ||| || ||||| | ||| | ||||||||||||||||| ||| Sbjct 175962 GGGTGTACCTTTCTTCAGCGTCAGTGGTT--CCG---AGTTTGTGGAGATGTTTGTCGGT 175908 Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476 || ||||| || ||||| |||||||| | || ||| | | ||| || |||||| Sbjct 175907 GTTGGTGCTTCCAGAGTTCGAGATCTCTTCGCGATGGCCAGAAAGAATACCCCTTGTATT 175848 Query 175477 GTCTTCATTGATGAGATTGATGC 175499 |||||||||| ||||||||||| Sbjct 175847 ATCTTCATTGACGAGATTGATGC 175825 >seq567 Length=145468 Score = 84.2 bits (92), Expect = 3e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 27790 CCAAATCCACCCGCACCTCTCTCTGTCTCTTCAAGAACACCAATTTCCTGCACATCGGGT 27849 |||||||| ||||| || || | ||||||| | | | ||| || |||||| Sbjct 88795 CCAAATCCTCCCGCTCCCCTAACGCTCTCTTCCAATTCCTGGACCTCCAAGACCTCGGGT 88736 Query 27850 GTTTCACAGCGCTCAAGGACAAGTTGTGCGATGCGATCCCCTTTCTTTACCTCAAAGTCT 27909 || | | ||| | ||| | ||| || | ||||| || | ||| ||||| || ||| Sbjct 88735 GTGTAGATTCTCTCCAAGACCAATTGAGCTACACGATCTCCCTCCTTGACCTCGAAATCT 88676 Query 27910 TTGTCTCCGTGATTGAAGAGAACGACTTTGACTTCACCTGTATAGTCGGGATCAATAACA 27969 || || |||||||||||||| | ||||||||||| || ||||| | |||||| ||| Sbjct 88675 TTCTCGCCGTGATTGAAGAGGAGGACTTTGACTTGGCCACGGTAGTCAGCATCAATTACA 88616 Query 27970 CCCGCACCA 27978 || || ||| Sbjct 88615 CCTGCGCCA 88607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596556818496320