Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq962 343 2e-89
seq938 269 3e-67
seq1406 178 2e-39
seq861 141 1e-28
seq900 127 3e-24
seq291 122 1e-22
seq927 111 2e-19
>seq962
Length=65715
Score = 343 bits (380), Expect = 2e-89
Identities = 493/690 (71%), Gaps = 5/690 (1%)
Strand=Plus/Minus
Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358
|| || ||||||||| | ||||| || ||||| ||||| ||| | | | | |||||||
Sbjct 59915 GCCATAGGTATCGATCTTGGAACCACCTACTCCTGTGTAGGTATCTATCGAGATGATCGA 59856
Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418
| ||||||||| | || ||||| |||||||| || || || || | ||||||||| |||
Sbjct 59855 ATTGAGATTATCGCCAACGACCAGGGAAACCGAACCACCCCTTCCTTCGTTGCCTTCACA 59796
Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478
|||| || ||||| | |||||||||||||| || || || |||||||| |||
Sbjct 59795 GATACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCCGCCAAC 59736
Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538
|| ||||| ||||| |||||||| || || || ||||| | || || ||||||| |
Sbjct 59735 ACAGTCTTCGACGCAAAGCGTCTGATCGGACGTAAGTTCGCAGACCAGGAAGTCCAGGCT 59676
Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGT-GTGGCTGATAAGCCTATGATTAA 195597
||||| ||| ||| | | | | || | || |||| || |||||| | | |
Sbjct 59675 GATATGAAGCACTTTCCCT-TCACC--GTCCTCGACCGTGGTGGA-AAGCCTGTCGTCGA 59620
Query 195598 TGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTT 195657
|||| || | || |||||||| ||||| | || || ||||| || || ||| | ||
Sbjct 59619 GATTGAGTTCAAGGGCGAGAAGAAGCAATTCACACCAGAGGAAATCTCTTCCATGATCTT 59560
Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGT 195717
| | ||||||| ||||| || || ||| | | ||| ||| || || | || || ||
Sbjct 59559 GGTCAAGATGAGAGAGACCGCCGAGGCTTACCTTGGTGGAACCGTCAACAACGCCGTCGT 59500
Query 195718 GACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTAT 195777
|| || || || ||||| | ||||||||||| || || || |||||||| | | ||
Sbjct 59499 CACCGTCCCAGCATACTTTACCGATTCACAACGTCAAGCCACCAAGGACGCCGGTTTAAT 59440
Query 195778 TGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837
|| ||||| ||| |||| |||| ||||| || || || || || || ||||| || ||
Sbjct 59439 CGCTGGTCTCAACGTTCTTCGAATCATCAACGAGCCTACCGCAGCCGCCATTGCATACGG 59380
Query 195838 TCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTAC 195897
||| |||||||| || | || ||| || | ||||||||||| ||||| || ||
Sbjct 59379 TCTCGACAAGAAGGTTGAGGGTGAGCGAAACGTTCTCATCTTTGATCTTGGTGGAGGAAC 59320
Query 195898 GTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGG 195957
|| ||||||||||| | | || || | ||||| || ||||| ||| | || || ||
Sbjct 59319 TTTCGATGTCTCACTCTTGACCATCGAGGAGGGTATCTTTGAAGTCAAGTCCACCGCAGG 59260
Query 195958 TGATACTCATCTAGGTGGTGAAGATTTCGA 195987
||||||||| | |||||||| ||||||||
Sbjct 59259 TGATACTCACTTGGGTGGTGAGGATTTCGA 59230
>seq938
Length=599849
Score = 269 bits (298), Expect = 3e-67
Identities = 505/732 (69%), Gaps = 35/732 (5%)
Strand=Plus/Minus
Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778
||||| || || ||||||| || || || || || || ||||| || | ||| |||
Sbjct 176519 ACTGTCCCAGCCTACTTCAACGACAACCAGCGTCAAGCCACCAAGGATGCAGGTGCCATT 176460
Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838
|| ||||| ||| ||| |||| ||||| || ||||| || ||||| || || || |||
Sbjct 176459 GCCGGTCTTAACGTTCTCCGAATCATCAACGAGCCAACTGCCGCTGCTATCGCATACGGT 176400
Query 195839 CT-------GGACAAG---AACAAGGA-CGAAGATAAAAATGTATTGATCTTTGATCTCG 195887
|| ||| ||| |||||||| |||| |||| ||||||| |||||||
Sbjct 176399 CTCGGTGCCGGA-AAGTCCAACAAGGAGCGAA-------ATGTCTTGATCTACGATCTCG 176348
Query 195888 GTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGG 195947
|||| || || || |||||||| |||||||| || | |||||| | ||| || ||||
Sbjct 176347 GTGGAGGAACTTTCGATGTCTCCCTTCTCAACATCCAGGGTGGTGTTTTCACCGTCAAGG 176288
Query 195948 CTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTT-CTCCGTCAT 196006
| |||||||||||||| ||| | || ||| ||||||||||| | | ||| ||| |||
Sbjct 176287 CCACTGCTGGTGATACCCATTTGGGAGGTCAAGATTTCGATAC-CAACTTGCTCGATCAC 176229
Query 196007 TTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTT 196066
|| | || ||| |||||| ||||| ||| | || || || | | |||||
Sbjct 176228 TTCAAGAAGGAATTCACAAGAAAGACCAAGAAGGATTTGTCCGGTGATGCCCGTGCTCTA 176169
Query 196067 CGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACG--GCTCAAA 196124
|| || ||| | ||||| || || ||||| || ||||||| || | ||| || ||||
Sbjct 176168 CGACGTCTTCGTACTGCTTGCGAGCGTGCTAAGAGAACTCTTTC--CAACGGTGCCCAAA 176111
Query 196125 CAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTG 196184
| | |||||||||||||| ||||| || ||| |||||| | | ||||||||||
Sbjct 176110 CCACTGTTGAGATTGATTCTTTGTTCGATGGAGAAGACTTCAACGCTCAAATTACCCGTG 176051
Query 196185 CACGTTTTGAAGAGTTAAACTCTGATTTGTTTA--GGAAGTGTATGGAACCTGTTGAACA 196242
| ||||| || || || ||||| | || | || | | |||| || || | |||
Sbjct 176050 CTCGTTTCGAGGACTTGAACTCAAAGGCCTTCAATGGTA--CTTTGGACCCAGTCGCACA 175993
Query 196243 AGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGG 196302
||| | || || || || || ||| ||||| || || ||||| || || || ||
Sbjct 175992 GGTATTGAAGGATGCCAATATCGACAAGAGCAAGGTCGACGAGATTGTGCTCGTTGGTGG 175933
Query 196303 ATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGC---TTCTTCAATAATAAAGA 196359
||| ||||||||||| ||| ||| || | || ||| ||||| || || |
Sbjct 175932 ATCCACCCGTATTCCACGGATACAAAAGCTCCT---CAGCGATTTCTTTGATGGCAAGAA 175876
Query 196360 TTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGC 196419
| | || | |||||||| ||||| || ||||| || ||||| || || || ||||
Sbjct 175875 GCTCGAGAAGAGCATCAACCCTGATGAGGCTGTTGCATACGGTGCTGCTGTCCAAGCTGG 175816
Query 196420 TATTCTCTCAGG 196431
|||| | |||||
Sbjct 175815 TATTTTGTCAGG 175804
>seq1406
Length=252419
Score = 178 bits (196), Expect = 2e-39
Identities = 170/218 (78%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 171872 TTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCG 171931
|||| || ||| | || || || || |||||||||||||||||||| || || || ||||
Sbjct 214888 TTGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGATACTATCG 214947
Query 171932 ATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTA 171991
| ||| |||| | ||||||||||| ||||| ||||| ||||| || || || ||||||
Sbjct 214948 ACAACGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCACCTGACCAACAGAGACTTA 215007
Query 171992 TTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGG 172051
| |||||||| || || ||||| || || || ||||| | || ||||| | |||||||
Sbjct 215008 TCTTTGCTGGGAAGCAACTTGAGGACGGCCGCACCCTTTCGGACTACAATATCCAAAAGG 215067
Query 172052 AGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
| |||||||||||| | ||||| | || || ||||||
Sbjct 215068 AATCTACTCTACACTTGGTTCTCCGACTCCGTGGTGGT 215105
Score = 174 bits (192), Expect = 2e-38
Identities = 161/204 (79%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945
|| || || ||||||||||| ||||| |||||||| ||||| ||||||||| |||| ||
Sbjct 214619 ACCGGTAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACCATCGATAACGTCAAGTCC 214678
Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005
||||| || || ||||| || ||||| || ||||||||||| | || ||||| || ||
Sbjct 214679 AAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAGCAACGTTTGATCTTTGCCGGAAAG 214738
Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065
||||| || || |||||||| || ||||||||||| | || |||||||| || || |||
Sbjct 214739 CAGCTCGAGGACGGACGTACTCTATCTGATTACAACATCCAGAAGGAGTCCACCCTCCAC 214798
Query 172066 CTTGTTCTAAGGCTTCGGGGTGGT 172089
|| || || | ||||| || |||
Sbjct 214799 CTGGTCCTCCGTCTTCGTGGCGGT 214822
Score = 163 bits (180), Expect = 4e-35
Identities = 176/233 (76%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916
|| |||||||||| || || || ||||| || ||||| || ||||| |||||||||||||
Sbjct 215101 GTGGTATGCAAATATTCGTCAAGACCCTCACCGGAAAGACGATCACTCTCGAGGTTGAGT 215160
Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976
| ||||| || ||||| || | || | |||||||| |||||||| || || ||||| |
Sbjct 215161 CTTCAGATACTATCGACAATGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTG 215220
Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036
| || || ||||| ||||| || || || || | || ||||| || ||| | | || |
Sbjct 215221 ACCAACAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTCCGACT 215280
Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
||||| | ||||||||||| || || || | || || | ||||| ||||||
Sbjct 215281 ACAACATCCAAAAGGAGTCCACACTTCATTTGGTCCTTCGTCTTCGTGGTGGT 215333
>seq861
Length=344942
Score = 141 bits (156), Expect = 1e-28
Identities = 155/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945
|| || || ||||||||||||||||| || ||| ||||| || ||||| ||||| ||
Sbjct 25378 ACGGGCAAGACTATCACCCTCGAGGTCGAATCGAGTGACACGATTGATAATGTCAAATCC 25437
Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005
||||| || || ||||| || ||||| || ||||| ||||| || || || || || |||
Sbjct 25438 AAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAACAACGCCTAATCTTCGCCGGCAAA 25497
Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065
|| || ||||| || || |||||| | || |||||| | || |||||||| || || ||
Sbjct 25498 CAACTCGAAGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCAACCCTTCAT 25557
Query 172066 CTTGTTCTAAGGCTTCGGGGTGGTGC 172091
|| || || | || || || || ||
Sbjct 25558 CTCGTCTTACGTCTACGTGGAGGAGC 25583
>seq900
Length=80126
Score = 127 bits (140), Expect = 3e-24
Identities = 199/281 (71%), Gaps = 9/281 (3%)
Strand=Plus/Minus
Query 195710 GCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCT 195769
|||||||| ||||| || || || |||| || || |||| || || ||||| |||
Sbjct 72314 GCAGTTGTTACTGTGCCAGCCTATTTCAACGACAACCAGAGACAAGCAACCAAGGATGCT 72255
Query 195770 GCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATT 195829
| || ||||| ||| | ||| || | || |||| || || || || || || ||
Sbjct 72254 GGTGTCATTGCCGGTTTGAACGTCCTCCGTATCGTCAACGAGCCCACCGCCGCAGCTATC 72195
Query 195830 GCTTATGGTCTGGACAAGAA---CAAGGACGAAGATAAAAATGTATTGATCTTTGATCTC 195886
|| || ||||| |||||| |||||| || |||| |||| ||| ||||||
Sbjct 72194 GCCTACGGTCTTGACAAGGTTGGCAAGGA----GAGGCAAATC-ATTG-TCTACGATCTC 72141
Query 195887 GGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAG 195946
||||| || || |||||||| || || ||| |||||||| |||| | ||||| ||
Sbjct 72140 GGTGGAGGAACCTTTGATGTTTCCCTCCTCTCTATTGAAGATGGTGTTTTCGAGGTTCTT 72081
Query 195947 GCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987
|||| |||||||| || ||| | |||||||| ||||||||
Sbjct 72080 TCTACCGCTGGTGACACCCATTTGGGTGGTGAGGATTTCGA 72040
>seq291
Length=157447
Score = 122 bits (134), Expect = 1e-22
Identities = 239/350 (68%), Gaps = 10/350 (3%)
Strand=Plus/Plus
Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721
|||||||||||||| || || | | | | || | | || |||| ||||| ||
Sbjct 21869 AAGATGAAGGAGACCGCTGAGGCCTACCTCACAAAGCCAATCCAAAATGCCGTTGTCACA 21928
Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781
|| ||||| ||||||| ||||||||||| || || || ||||| |||| | |||||
Sbjct 21929 GTCCCTGCATACTTCAACGATTCACAACGTCAAGCCACCAAGGATGCTGGTCAAATTGCC 21988
Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841
|| || ||| ||| ||| | | || || ||||| || ||||| |||| || || ||
Sbjct 21989 GGACTCAACGTTCTGAGAGTGGTTAACGAGCCAACTGCTGCTGCGCTTGCATACGGACTT 22048
Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901
|| ||| | ||||| ||||| | | ||| ||| | ||||| || || ||
Sbjct 22049 GAGAAGGATGAGGAC-AAGATCA-----TCGCAGTCTACGATTTGGGTGGAGGAACCTTC 22102
Query 195902 GATGTCTCACTTCTCAATAT--TGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTG 195959
||| |||| ||||| | || |||| ||| | ||||| || ||| | || || |
Sbjct 22103 GATATCTCCGTTCTCGAGATCCAGAAG--GGTGTGTTCGAGGTCAAGTCCACCAACGGAG 22160
Query 195960 ATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTG 196009
| ||||| | |||||||| ||||||||| | ||| ||||||| |||
Sbjct 22161 ACACTCACTTGGGTGGTGAGGATTTCGATATCCACCTTGTCCGTCACTTG 22210
>seq927
Length=373674
Score = 111 bits (122), Expect = 2e-19
Identities = 275/413 (67%), Gaps = 12/413 (3%)
Strand=Plus/Minus
Query 198450 TTCAAGGATGTTGAGGGTATCGACTCAGCTAAGGATGAGCTCGAGGAGATTGTTGATTTT 198509
||||||||||||| |||||| ||| ||| ||| ||| | ||| | ||| |||
Sbjct 176138 TTCAAGGATGTTGCGGGTATGGACGAAGCCAAGATGGAGATTATGGAATTCGTTTCATTT 176079
Query 198510 CTTAAAAACCCCGAAAAGTACTATGGAAGTGGTGCCCGAATCCCACGTGGTGCTCTTCTC 198569
|| || | || || | | | | || ||||| ||||| || || || | ||
Sbjct 176078 CTAAAGACACCTGAGCAATTCGAAAGATTGGGTGCTAAGATCCCTCGAGGAGCCATCCTT 176019
Query 198570 GCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAATCGAGT 198629
| ||| | || ||||| ||||| || | ||||| || | || || |||||| ||
Sbjct 176018 TCTGGTCCACCTGGTACCGGTAAGACTTTACTAGCAAAGGCCACAGCCGGAGAATCGGGT 175959
Query 198630 GTCCCCTTTCTTCAGTGCTCCGCGG---CGAGTTTCATCGAGATGTTCGTTGGTGTTGGT 198686
|| || ||||||||| | || | || ||||||| | |||||||| || |||||||||
Sbjct 175958 GTACC-TTTCTTCAGCG-TCAGTGGTTCCGAGTTTG-TGGAGATGTTTGTCGGTGTTGGT 175902
Query 198687 GCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAAAATCAACCATGTATCATCTTC 198746
||| | || || || ||||| | | || | | ||| || ||||| ||||||
Sbjct 175901 GCTTCCAGAGTTCGAGATCTCTTCGCGATGGCCAGAAAGAATACCCCTTGTATTATCTTC 175842
Query 198747 ATTGATGAGATTGACGCTGTTGGTAAGAAGCGTGGTGGAACTACTACACCTGGT------ 198800
||||| |||||||| || | || ||| |||||| | || | || ||||
Sbjct 175841 ATTGACGAGATTGATGCAATCGGAAAGGCTCGTGGTAAAGCTGGTTCATTTGGTGGTGGA 175782
Query 198801 AATGATGAGCGTGAGCAGACGATTAACCAGCTTCTCACTGAGATGGATGGTTT 198853
|||||||| || || || | || ||| || | || ||||||||||||||
Sbjct 175781 AATGATGAACGAGAAGCCACTCTCAATCAGATTTTAACCGAGATGGATGGTTT 175729
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657848305298080
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