Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq962 343 2e-89 seq938 269 3e-67 seq1406 178 2e-39 seq861 141 1e-28 seq900 127 3e-24 seq291 122 1e-22 seq927 111 2e-19 >seq962 Length=65715 Score = 343 bits (380), Expect = 2e-89 Identities = 493/690 (71%), Gaps = 5/690 (1%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || ||||||||| | ||||| || ||||| ||||| ||| | | | | ||||||| Sbjct 59915 GCCATAGGTATCGATCTTGGAACCACCTACTCCTGTGTAGGTATCTATCGAGATGATCGA 59856 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 | ||||||||| | || ||||| |||||||| || || || || | ||||||||| ||| Sbjct 59855 ATTGAGATTATCGCCAACGACCAGGGAAACCGAACCACCCCTTCCTTCGTTGCCTTCACA 59796 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| || ||||| | |||||||||||||| || || || |||||||| ||| Sbjct 59795 GATACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCCGCCAAC 59736 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||| ||||| |||||||| || || || ||||| | || || ||||||| | Sbjct 59735 ACAGTCTTCGACGCAAAGCGTCTGATCGGACGTAAGTTCGCAGACCAGGAAGTCCAGGCT 59676 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGT-GTGGCTGATAAGCCTATGATTAA 195597 ||||| ||| ||| | | | | || | || |||| || |||||| | | | Sbjct 59675 GATATGAAGCACTTTCCCT-TCACC--GTCCTCGACCGTGGTGGA-AAGCCTGTCGTCGA 59620 Query 195598 TGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTT 195657 |||| || | || |||||||| ||||| | || || ||||| || || ||| | || Sbjct 59619 GATTGAGTTCAAGGGCGAGAAGAAGCAATTCACACCAGAGGAAATCTCTTCCATGATCTT 59560 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGT 195717 | | ||||||| ||||| || || ||| | | ||| ||| || || | || || || Sbjct 59559 GGTCAAGATGAGAGAGACCGCCGAGGCTTACCTTGGTGGAACCGTCAACAACGCCGTCGT 59500 Query 195718 GACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTAT 195777 || || || || ||||| | ||||||||||| || || || |||||||| | | || Sbjct 59499 CACCGTCCCAGCATACTTTACCGATTCACAACGTCAAGCCACCAAGGACGCCGGTTTAAT 59440 Query 195778 TGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 || ||||| ||| |||| |||| ||||| || || || || || || ||||| || || Sbjct 59439 CGCTGGTCTCAACGTTCTTCGAATCATCAACGAGCCTACCGCAGCCGCCATTGCATACGG 59380 Query 195838 TCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTAC 195897 ||| |||||||| || | || ||| || | ||||||||||| ||||| || || Sbjct 59379 TCTCGACAAGAAGGTTGAGGGTGAGCGAAACGTTCTCATCTTTGATCTTGGTGGAGGAAC 59320 Query 195898 GTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGG 195957 || ||||||||||| | | || || | ||||| || ||||| ||| | || || || Sbjct 59319 TTTCGATGTCTCACTCTTGACCATCGAGGAGGGTATCTTTGAAGTCAAGTCCACCGCAGG 59260 Query 195958 TGATACTCATCTAGGTGGTGAAGATTTCGA 195987 ||||||||| | |||||||| |||||||| Sbjct 59259 TGATACTCACTTGGGTGGTGAGGATTTCGA 59230 >seq938 Length=599849 Score = 269 bits (298), Expect = 3e-67 Identities = 505/732 (69%), Gaps = 35/732 (5%) Strand=Plus/Minus Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 ||||| || || ||||||| || || || || || || ||||| || | ||| ||| Sbjct 176519 ACTGTCCCAGCCTACTTCAACGACAACCAGCGTCAAGCCACCAAGGATGCAGGTGCCATT 176460 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 || ||||| ||| ||| |||| ||||| || ||||| || ||||| || || || ||| Sbjct 176459 GCCGGTCTTAACGTTCTCCGAATCATCAACGAGCCAACTGCCGCTGCTATCGCATACGGT 176400 Query 195839 CT-------GGACAAG---AACAAGGA-CGAAGATAAAAATGTATTGATCTTTGATCTCG 195887 || ||| ||| |||||||| |||| |||| ||||||| ||||||| Sbjct 176399 CTCGGTGCCGGA-AAGTCCAACAAGGAGCGAA-------ATGTCTTGATCTACGATCTCG 176348 Query 195888 GTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGG 195947 |||| || || || |||||||| |||||||| || | |||||| | ||| || |||| Sbjct 176347 GTGGAGGAACTTTCGATGTCTCCCTTCTCAACATCCAGGGTGGTGTTTTCACCGTCAAGG 176288 Query 195948 CTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTT-CTCCGTCAT 196006 | |||||||||||||| ||| | || ||| ||||||||||| | | ||| ||| ||| Sbjct 176287 CCACTGCTGGTGATACCCATTTGGGAGGTCAAGATTTCGATAC-CAACTTGCTCGATCAC 176229 Query 196007 TTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTT 196066 || | || ||| |||||| ||||| ||| | || || || | | ||||| Sbjct 176228 TTCAAGAAGGAATTCACAAGAAAGACCAAGAAGGATTTGTCCGGTGATGCCCGTGCTCTA 176169 Query 196067 CGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACG--GCTCAAA 196124 || || ||| | ||||| || || ||||| || ||||||| || | ||| || |||| Sbjct 176168 CGACGTCTTCGTACTGCTTGCGAGCGTGCTAAGAGAACTCTTTC--CAACGGTGCCCAAA 176111 Query 196125 CAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTG 196184 | | |||||||||||||| ||||| || ||| |||||| | | |||||||||| Sbjct 176110 CCACTGTTGAGATTGATTCTTTGTTCGATGGAGAAGACTTCAACGCTCAAATTACCCGTG 176051 Query 196185 CACGTTTTGAAGAGTTAAACTCTGATTTGTTTA--GGAAGTGTATGGAACCTGTTGAACA 196242 | ||||| || || || ||||| | || | || | | |||| || || | ||| Sbjct 176050 CTCGTTTCGAGGACTTGAACTCAAAGGCCTTCAATGGTA--CTTTGGACCCAGTCGCACA 175993 Query 196243 AGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGG 196302 ||| | || || || || || ||| ||||| || || ||||| || || || || Sbjct 175992 GGTATTGAAGGATGCCAATATCGACAAGAGCAAGGTCGACGAGATTGTGCTCGTTGGTGG 175933 Query 196303 ATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGC---TTCTTCAATAATAAAGA 196359 ||| ||||||||||| ||| ||| || | || ||| ||||| || || | Sbjct 175932 ATCCACCCGTATTCCACGGATACAAAAGCTCCT---CAGCGATTTCTTTGATGGCAAGAA 175876 Query 196360 TTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGC 196419 | | || | |||||||| ||||| || ||||| || ||||| || || || |||| Sbjct 175875 GCTCGAGAAGAGCATCAACCCTGATGAGGCTGTTGCATACGGTGCTGCTGTCCAAGCTGG 175816 Query 196420 TATTCTCTCAGG 196431 |||| | ||||| Sbjct 175815 TATTTTGTCAGG 175804 >seq1406 Length=252419 Score = 178 bits (196), Expect = 2e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 171872 TTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCG 171931 |||| || ||| | || || || || |||||||||||||||||||| || || || |||| Sbjct 214888 TTGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGATACTATCG 214947 Query 171932 ATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTA 171991 | ||| |||| | ||||||||||| ||||| ||||| ||||| || || || |||||| Sbjct 214948 ACAACGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCACCTGACCAACAGAGACTTA 215007 Query 171992 TTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGG 172051 | |||||||| || || ||||| || || || ||||| | || ||||| | ||||||| Sbjct 215008 TCTTTGCTGGGAAGCAACTTGAGGACGGCCGCACCCTTTCGGACTACAATATCCAAAAGG 215067 Query 172052 AGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | |||||||||||| | ||||| | || || |||||| Sbjct 215068 AATCTACTCTACACTTGGTTCTCCGACTCCGTGGTGGT 215105 Score = 174 bits (192), Expect = 2e-38 Identities = 161/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945 || || || ||||||||||| ||||| |||||||| ||||| ||||||||| |||| || Sbjct 214619 ACCGGTAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACCATCGATAACGTCAAGTCC 214678 Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 ||||| || || ||||| || ||||| || ||||||||||| | || ||||| || || Sbjct 214679 AAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAGCAACGTTTGATCTTTGCCGGAAAG 214738 Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065 ||||| || || |||||||| || ||||||||||| | || |||||||| || || ||| Sbjct 214739 CAGCTCGAGGACGGACGTACTCTATCTGATTACAACATCCAGAAGGAGTCCACCCTCCAC 214798 Query 172066 CTTGTTCTAAGGCTTCGGGGTGGT 172089 || || || | ||||| || ||| Sbjct 214799 CTGGTCCTCCGTCTTCGTGGCGGT 214822 Score = 163 bits (180), Expect = 4e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || |||||||||| || || || ||||| || ||||| || ||||| ||||||||||||| Sbjct 215101 GTGGTATGCAAATATTCGTCAAGACCCTCACCGGAAAGACGATCACTCTCGAGGTTGAGT 215160 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | ||||| || ||||| || | || | |||||||| |||||||| || || ||||| | Sbjct 215161 CTTCAGATACTATCGACAATGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTG 215220 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | || || ||||| ||||| || || || || | || ||||| || ||| | | || | Sbjct 215221 ACCAACAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTCCGACT 215280 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| | ||||||||||| || || || | || || | ||||| |||||| Sbjct 215281 ACAACATCCAAAAGGAGTCCACACTTCATTTGGTCCTTCGTCTTCGTGGTGGT 215333 >seq861 Length=344942 Score = 141 bits (156), Expect = 1e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945 || || || ||||||||||||||||| || ||| ||||| || ||||| ||||| || Sbjct 25378 ACGGGCAAGACTATCACCCTCGAGGTCGAATCGAGTGACACGATTGATAATGTCAAATCC 25437 Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 ||||| || || ||||| || ||||| || ||||| ||||| || || || || || ||| Sbjct 25438 AAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAACAACGCCTAATCTTCGCCGGCAAA 25497 Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065 || || ||||| || || |||||| | || |||||| | || |||||||| || || || Sbjct 25498 CAACTCGAAGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCAACCCTTCAT 25557 Query 172066 CTTGTTCTAAGGCTTCGGGGTGGTGC 172091 || || || | || || || || || Sbjct 25558 CTCGTCTTACGTCTACGTGGAGGAGC 25583 >seq900 Length=80126 Score = 127 bits (140), Expect = 3e-24 Identities = 199/281 (71%), Gaps = 9/281 (3%) Strand=Plus/Minus Query 195710 GCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCT 195769 |||||||| ||||| || || || |||| || || |||| || || ||||| ||| Sbjct 72314 GCAGTTGTTACTGTGCCAGCCTATTTCAACGACAACCAGAGACAAGCAACCAAGGATGCT 72255 Query 195770 GCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATT 195829 | || ||||| ||| | ||| || | || |||| || || || || || || || Sbjct 72254 GGTGTCATTGCCGGTTTGAACGTCCTCCGTATCGTCAACGAGCCCACCGCCGCAGCTATC 72195 Query 195830 GCTTATGGTCTGGACAAGAA---CAAGGACGAAGATAAAAATGTATTGATCTTTGATCTC 195886 || || ||||| |||||| |||||| || |||| |||| ||| |||||| Sbjct 72194 GCCTACGGTCTTGACAAGGTTGGCAAGGA----GAGGCAAATC-ATTG-TCTACGATCTC 72141 Query 195887 GGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAG 195946 ||||| || || |||||||| || || ||| |||||||| |||| | ||||| || Sbjct 72140 GGTGGAGGAACCTTTGATGTTTCCCTCCTCTCTATTGAAGATGGTGTTTTCGAGGTTCTT 72081 Query 195947 GCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 |||| |||||||| || ||| | |||||||| |||||||| Sbjct 72080 TCTACCGCTGGTGACACCCATTTGGGTGGTGAGGATTTCGA 72040 >seq291 Length=157447 Score = 122 bits (134), Expect = 1e-22 Identities = 239/350 (68%), Gaps = 10/350 (3%) Strand=Plus/Plus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 |||||||||||||| || || | | | | || | | || |||| ||||| || Sbjct 21869 AAGATGAAGGAGACCGCTGAGGCCTACCTCACAAAGCCAATCCAAAATGCCGTTGTCACA 21928 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || ||||| ||||||| ||||||||||| || || || ||||| |||| | ||||| Sbjct 21929 GTCCCTGCATACTTCAACGATTCACAACGTCAAGCCACCAAGGATGCTGGTCAAATTGCC 21988 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 || || ||| ||| ||| | | || || ||||| || ||||| |||| || || || Sbjct 21989 GGACTCAACGTTCTGAGAGTGGTTAACGAGCCAACTGCTGCTGCGCTTGCATACGGACTT 22048 Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901 || ||| | ||||| ||||| | | ||| ||| | ||||| || || || Sbjct 22049 GAGAAGGATGAGGAC-AAGATCA-----TCGCAGTCTACGATTTGGGTGGAGGAACCTTC 22102 Query 195902 GATGTCTCACTTCTCAATAT--TGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTG 195959 ||| |||| ||||| | || |||| ||| | ||||| || ||| | || || | Sbjct 22103 GATATCTCCGTTCTCGAGATCCAGAAG--GGTGTGTTCGAGGTCAAGTCCACCAACGGAG 22160 Query 195960 ATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTG 196009 | ||||| | |||||||| ||||||||| | ||| ||||||| ||| Sbjct 22161 ACACTCACTTGGGTGGTGAGGATTTCGATATCCACCTTGTCCGTCACTTG 22210 >seq927 Length=373674 Score = 111 bits (122), Expect = 2e-19 Identities = 275/413 (67%), Gaps = 12/413 (3%) Strand=Plus/Minus Query 198450 TTCAAGGATGTTGAGGGTATCGACTCAGCTAAGGATGAGCTCGAGGAGATTGTTGATTTT 198509 ||||||||||||| |||||| ||| ||| ||| ||| | ||| | ||| ||| Sbjct 176138 TTCAAGGATGTTGCGGGTATGGACGAAGCCAAGATGGAGATTATGGAATTCGTTTCATTT 176079 Query 198510 CTTAAAAACCCCGAAAAGTACTATGGAAGTGGTGCCCGAATCCCACGTGGTGCTCTTCTC 198569 || || | || || | | | | || ||||| ||||| || || || | || Sbjct 176078 CTAAAGACACCTGAGCAATTCGAAAGATTGGGTGCTAAGATCCCTCGAGGAGCCATCCTT 176019 Query 198570 GCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAATCGAGT 198629 | ||| | || ||||| ||||| || | ||||| || | || || |||||| || Sbjct 176018 TCTGGTCCACCTGGTACCGGTAAGACTTTACTAGCAAAGGCCACAGCCGGAGAATCGGGT 175959 Query 198630 GTCCCCTTTCTTCAGTGCTCCGCGG---CGAGTTTCATCGAGATGTTCGTTGGTGTTGGT 198686 || || ||||||||| | || | || ||||||| | |||||||| || ||||||||| Sbjct 175958 GTACC-TTTCTTCAGCG-TCAGTGGTTCCGAGTTTG-TGGAGATGTTTGTCGGTGTTGGT 175902 Query 198687 GCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAAAATCAACCATGTATCATCTTC 198746 ||| | || || || ||||| | | || | | ||| || ||||| |||||| Sbjct 175901 GCTTCCAGAGTTCGAGATCTCTTCGCGATGGCCAGAAAGAATACCCCTTGTATTATCTTC 175842 Query 198747 ATTGATGAGATTGACGCTGTTGGTAAGAAGCGTGGTGGAACTACTACACCTGGT------ 198800 ||||| |||||||| || | || ||| |||||| | || | || |||| Sbjct 175841 ATTGACGAGATTGATGCAATCGGAAAGGCTCGTGGTAAAGCTGGTTCATTTGGTGGTGGA 175782 Query 198801 AATGATGAGCGTGAGCAGACGATTAACCAGCTTCTCACTGAGATGGATGGTTT 198853 |||||||| || || || | || ||| || | || |||||||||||||| Sbjct 175781 AATGATGAACGAGAAGCCACTCTCAATCAGATTTTAACCGAGATGGATGGTTT 175729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657848305298080