Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq1406 127 4e-24
>seq1406
Length=252419
Score = 127 bits (140), Expect = 4e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||| | | ||||| |||| ||| | ||| | ||| || || || ||||||
Sbjct 215335 ATACCACCACGAAGACGAAGGACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCG 215276
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| || |||| ||| || ||||| || || || ||||| | || |||||| |||||
Sbjct 215275 GACAAGGTTCGGCCATCCTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGT 215216
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || || || ||||| || || || | || | ||| |||||||| |||||||||
Sbjct 215215 GGGATACCCTCCTTATCCTGAATCTTCGACTTCACATTGTCGATAGTATCTGAAGACTCA 215156
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || ||||| || || || || || || || || || |||||||||||
Sbjct 215155 ACCTCGAGAGTGATCGTCTTTCCGGTGAGGGTCTTGACGAATATTTGCAT 215106
Score = 96.9 bits (106), Expect = 6e-15
Identities = 115/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264
||| || ||||| || ||||| ||||| |||| ||||||||| || || || || || ||
Sbjct 215489 ATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGGGATACCCTCCTT 215430
Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324
||| || || || | || | ||| ||| || || |||||||||||||||| || ||
Sbjct 215429 ATCCTGGATCTTTGACTTGACATTATCAATGGTGTCCGAAGACTCAACTTCTAATGTAAT 215370
Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||| || || || | || || || || || |||||
Sbjct 215369 AGTCTTGCCCGTCAAAGTCTTAACGAAGATCTGCAT 215334
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899635124904480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |