Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1406 127 4e-24 >seq1406 Length=252419 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | ||||| |||| ||| | ||| | ||| || || || |||||| Sbjct 215335 ATACCACCACGAAGACGAAGGACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCG 215276 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || |||| ||| || ||||| || || || ||||| | || |||||| ||||| Sbjct 215275 GACAAGGTTCGGCCATCCTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGT 215216 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || ||||| || || || | || | ||| |||||||| ||||||||| Sbjct 215215 GGGATACCCTCCTTATCCTGAATCTTCGACTTCACATTGTCGATAGTATCTGAAGACTCA 215156 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || || || || || || || ||||||||||| Sbjct 215155 ACCTCGAGAGTGATCGTCTTTCCGGTGAGGGTCTTGACGAATATTTGCAT 215106 Score = 96.9 bits (106), Expect = 6e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || ||||| || ||||| ||||| |||| ||||||||| || || || || || || Sbjct 215489 ATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGGGATACCCTCCTT 215430 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || || | || | ||| ||| || || |||||||||||||||| || || Sbjct 215429 ATCCTGGATCTTTGACTTGACATTATCAATGGTGTCCGAAGACTCAACTTCTAATGTAAT 215370 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || || | || || || || || ||||| Sbjct 215369 AGTCTTGCCCGTCAAAGTCTTAACGAAGATCTGCAT 215334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899635124904480