Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq843 131 5e-25
seq2 95.1 4e-14
seq1428 93.3 1e-13
>seq843
Length=104768
Score = 131 bits (144), Expect = 5e-25
Identities = 578/905 (64%), Gaps = 19/905 (2%)
Strand=Plus/Minus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
||| || || || ||| ||||| ||| || || |||||| || | |||||| |||||
Sbjct 63984 GTACTCGACGATTTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTT 63925
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
|| | ||| |||||||||||||| || ||| | ||| |||| ||||| | || ||
Sbjct 63924 GCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGC 63865
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809
|| || || ||| || | |||| || || |||| |||| || ||
Sbjct 63864 CTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCTCTTGCGACCCTTGCCCTCAGA 63805
Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869
||| |||||| ||||| || | | | || |||||||| ||| || ||||| ||
Sbjct 63804 CTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACCAGGACA 63745
Query 155870 CTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATACA 155927
|| | ||||| | || | ||| ||| | || ||||||| ||| || | |
Sbjct 63744 CTCGTTAGGGCACATCAATGTCCAGTCGAGATT--CTTTTCAACACGCTTCATGAAGAGA 63687
Query 155928 TCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTC 155987
|| ||| | ||| ||||| || || | || |||||| | || || |||
Sbjct 63686 TCTGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCATGGTTC 63627
Query 155988 TTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAA 156047
|| || || || | ||| || || ||| | || |||||| || || || || |||
Sbjct 63626 TTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAA 63567
Query 156048 CTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCT 156104
|||| | |||| ||||| ||||| ||||| | || || || ||||| || |
Sbjct 63566 GCACCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTGAAAACTCTG 63507
Query 156105 AGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCGA-ATATGCGAACCAGATG 156162
|||||||||| || || ||||| | || || || || |||| ||| ||| || | |
Sbjct 63506 AGCATAGGAACGATTCCGTTGGAGTTTCCGTTAGTACCGGCGATATAAGCG--CCGGTCG 63449
Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT--TTAGAAATTTGAGCGCA 156220
|| | | |||| || || || |||||||| | ||| || ||||| |||||
Sbjct 63448 CACGGATTCTGTGAACATTGAGACCGATACCACC--AGCATTCTTTGAAATCATGGCGCA 63391
Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCA--TTGATAGTAGATAG 156278
||||| || | | ||||||| ||||| || || | || | |||| || ||
Sbjct 63390 AATCTTTAACGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATA--AGGAAG 63333
Query 156279 CACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATA 156338
|| || | ||| | ||||||| ||||| ||| || || || | || || |
Sbjct 63332 CAGGATGAAAGTTGTGCCTGTGGTGTGCCAGCTGCGAAGAGGGTTGGGGAGGCGTGGGTG 63273
Query 156339 AAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGA 156398
|| || || | ||||| | | ||| ||||| | ||| | || ||||||
Sbjct 63272 AAGTATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACCGTGA 63213
Query 156399 ATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATT 156458
|| | || | || | ||| ||||||||| ||||| || ||| ||||| |
Sbjct 63212 ATTCCGACCGCAACACGCATAATCATATGCTGTGGACGTTCGCAGATCTTGCCATCGAGG 63153
Query 156459 CGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGG 156518
|| || || |||| || || || || || || ||||| || | | | |||||||||
Sbjct 63152 CGGAGGAGATATGATCGCTCGAGGGTCTTGAAACCGAAGTATTGATAGTTGAAATCACGG 63093
Query 156519 TTGTA 156523
| |||
Sbjct 63092 TCGTA 63088
>seq2
Length=393521
Score = 95.1 bits (104), Expect = 4e-14
Identities = 116/152 (76%), Gaps = 6/152 (4%)
Strand=Plus/Minus
Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898
|| || || ||||||||| ||||| || |||||||||||||| | || ||| || |
Sbjct 370922 TGAGCAATTGTCATACGAGACGGAATGGCGTGGGGATTGATGATAAGATCTGGTA-CAAT 370864
Query 251899 CCATCAGCA-GTGAAGGGCATATCCTTT-TCCTCAATAA-TGTTTCCAATAGTTCCCTTT 251955
| | ||| ||||||||||| |||| |||| ||| | | |||||||| |||||
Sbjct 370863 GCCTTGGCAAGTGAAGGGCATGTCCTCCATCCT--ATACGTAATACCAATAGTACCCTTC 370806
Query 251956 TGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
||||||||||||||| |||||| ||||||||
Sbjct 370805 TGTCCGTGACGAGAAGCGAACTTGTCACCAAT 370774
Score = 93.3 bits (102), Expect = 1e-13
Identities = 206/307 (67%), Gaps = 4/307 (1%)
Strand=Plus/Minus
Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089
||||| || |||| |||||||||||||| | | || || || | ||| |||
Sbjct 173203 CCAACTGCGTCAAGTTCGTCAATGAAAACAATAGCAGGTGATTTACCCTTGGCAGCAGCA 173144
Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149
|||||||| | || || ||| || | |||||| || | || | |||||||| |
Sbjct 173143 AATAATTCACGAACTCGCTTTGCACCTACACCAACGTAGACCTCGTCGAATTCAGATCCA 173084
Query 289150 GATACTTGAAT--GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207
|| | |||| ||||| || ||||| ||||| || || | ||||| ||| ||||
Sbjct 173083 GACA--TGAAGAAGAATGGAACGCCAGCTTCACCTGCAACCGCTCGCGCCAAAAGAGTCT 173026
Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267
| || || ||||| || || ||| || ||||||||||| | ||| | ||| ||
Sbjct 173025 TTCCCGTACCAGGAGGACCAACTAGAAGTACTCCCTTTGGAAGTTTGCCACCAAGAGTAG 172966
Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327
| || || || ||||||| ||||| || | || | ||| || | ||| ||||| |
Sbjct 172965 AGAACTTTTCTGGATTCTTTAAGAATTCCACGAGATCTTGAAGCTCTTCTTTCGCCTCGT 172906
Query 289328 CACATCC 289334
| || ||
Sbjct 172905 CGCAACC 172899
>seq1428
Length=201619
Score = 93.3 bits (102), Expect = 1e-13
Identities = 177/261 (68%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642
||||| | |||||| ||||||||||||||| || || || || || ||||| || ||
Sbjct 86228 CTTGACAAGACGACGTTGAATATAACCAGTTTCAGCAGTCTTCACTGCGGTATCGATGAG 86169
Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAA 302702
||| |||||||| |||| || ||||| || | ||| ||| || ||| | | | |
Sbjct 86168 ACCTTCACGACCAGCCATGGCGTGGAAAAAGAACTCGGTTGGTGTTAACCCACGGAGATA 86109
Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAG 302762
||| | ||||| || || | | || || || | || ||| || || || || ||
Sbjct 86108 TGAGTTTTCAACAAATCCTCTTGATTCTGGGGAGTAATCATCCTTTGTGAAATGAGGAAG 86049
Query 302763 GGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCA 302822
|| | || | | ||| | || ||||||||||| || || ||||| || | |
Sbjct 86048 TGTTCGGTATTTGAATCCGAAAGGAATACGCTTTCCTTCCACAGATTGCTGACCAACGAG 85989
Query 302823 CGAAATCATCTGCGAAATATT 302843
|| | ||||||| || |||||
Sbjct 85988 CGCAGTCATCTGGGAGATATT 85968
Score = 93.3 bits (102), Expect = 1e-13
Identities = 107/141 (76%), Gaps = 5/141 (4%)
Strand=Plus/Minus
Query 301813 AGAATTTC-TTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGC 301871
|||||||| ||||| ||| || |||||| |||| || || ||| || | ||||| ||
Sbjct 87019 AGAATTTCCTTCAA-ACGAGGCACACCAAGGGTGACATT---CTTCGAAGACACACCTGC 86964
Query 301872 AAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931
||| ||||||||||| || || | ||| |||| || || |||||| ||| || ||||
Sbjct 86963 AAAATGGAAAGTATTGAGCGTCATTTGCGTAGCGGGTTCTCCAATAGATTGAGCAGCAAG 86904
Query 301932 CATACCAACCATTTCTCCTGG 301952
| |||||||||||||| ||
Sbjct 86903 GACTCCAACCATTTCTCCGGG 86883
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471785277965618
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |