Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq843 131 5e-25 seq2 95.1 4e-14 seq1428 93.3 1e-13 >seq843 Length=104768 Score = 131 bits (144), Expect = 5e-25 Identities = 578/905 (64%), Gaps = 19/905 (2%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || || || ||| ||||| ||| || || |||||| || | |||||| ||||| Sbjct 63984 GTACTCGACGATTTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTT 63925 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| |||||||||||||| || ||| | ||| |||| ||||| | || || Sbjct 63924 GCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGC 63865 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || || || ||| || | |||| || || |||| |||| || || Sbjct 63864 CTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCTCTTGCGACCCTTGCCCTCAGA 63805 Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869 ||| |||||| ||||| || | | | || |||||||| ||| || ||||| || Sbjct 63804 CTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACCAGGACA 63745 Query 155870 CTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATACA 155927 || | ||||| | || | ||| ||| | || ||||||| ||| || | | Sbjct 63744 CTCGTTAGGGCACATCAATGTCCAGTCGAGATT--CTTTTCAACACGCTTCATGAAGAGA 63687 Query 155928 TCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTC 155987 || ||| | ||| ||||| || || | || |||||| | || || ||| Sbjct 63686 TCTGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCATGGTTC 63627 Query 155988 TTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAA 156047 || || || || | ||| || || ||| | || |||||| || || || || ||| Sbjct 63626 TTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAA 63567 Query 156048 CTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCT 156104 |||| | |||| ||||| ||||| ||||| | || || || ||||| || | Sbjct 63566 GCACCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTGAAAACTCTG 63507 Query 156105 AGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCGA-ATATGCGAACCAGATG 156162 |||||||||| || || ||||| | || || || || |||| ||| ||| || | | Sbjct 63506 AGCATAGGAACGATTCCGTTGGAGTTTCCGTTAGTACCGGCGATATAAGCG--CCGGTCG 63449 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT--TTAGAAATTTGAGCGCA 156220 || | | |||| || || || |||||||| | ||| || ||||| ||||| Sbjct 63448 CACGGATTCTGTGAACATTGAGACCGATACCACC--AGCATTCTTTGAAATCATGGCGCA 63391 Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCA--TTGATAGTAGATAG 156278 ||||| || | | ||||||| ||||| || || | || | |||| || || Sbjct 63390 AATCTTTAACGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATA--AGGAAG 63333 Query 156279 CACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATA 156338 || || | ||| | ||||||| ||||| ||| || || || | || || | Sbjct 63332 CAGGATGAAAGTTGTGCCTGTGGTGTGCCAGCTGCGAAGAGGGTTGGGGAGGCGTGGGTG 63273 Query 156339 AAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGA 156398 || || || | ||||| | | ||| ||||| | ||| | || |||||| Sbjct 63272 AAGTATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACCGTGA 63213 Query 156399 ATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATT 156458 || | || | || | ||| ||||||||| ||||| || ||| ||||| | Sbjct 63212 ATTCCGACCGCAACACGCATAATCATATGCTGTGGACGTTCGCAGATCTTGCCATCGAGG 63153 Query 156459 CGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGG 156518 || || || |||| || || || || || || ||||| || | | | ||||||||| Sbjct 63152 CGGAGGAGATATGATCGCTCGAGGGTCTTGAAACCGAAGTATTGATAGTTGAAATCACGG 63093 Query 156519 TTGTA 156523 | ||| Sbjct 63092 TCGTA 63088 >seq2 Length=393521 Score = 95.1 bits (104), Expect = 4e-14 Identities = 116/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || || || ||||||||| ||||| || |||||||||||||| | || ||| || | Sbjct 370922 TGAGCAATTGTCATACGAGACGGAATGGCGTGGGGATTGATGATAAGATCTGGTA-CAAT 370864 Query 251899 CCATCAGCA-GTGAAGGGCATATCCTTT-TCCTCAATAA-TGTTTCCAATAGTTCCCTTT 251955 | | ||| ||||||||||| |||| |||| ||| | | |||||||| ||||| Sbjct 370863 GCCTTGGCAAGTGAAGGGCATGTCCTCCATCCT--ATACGTAATACCAATAGTACCCTTC 370806 Query 251956 TGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||||||||||||| |||||| |||||||| Sbjct 370805 TGTCCGTGACGAGAAGCGAACTTGTCACCAAT 370774 Score = 93.3 bits (102), Expect = 1e-13 Identities = 206/307 (67%), Gaps = 4/307 (1%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||| || |||| |||||||||||||| | | || || || | ||| ||| Sbjct 173203 CCAACTGCGTCAAGTTCGTCAATGAAAACAATAGCAGGTGATTTACCCTTGGCAGCAGCA 173144 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 |||||||| | || || ||| || | |||||| || | || | |||||||| | Sbjct 173143 AATAATTCACGAACTCGCTTTGCACCTACACCAACGTAGACCTCGTCGAATTCAGATCCA 173084 Query 289150 GATACTTGAAT--GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 || | |||| ||||| || ||||| ||||| || || | ||||| ||| |||| Sbjct 173083 GACA--TGAAGAAGAATGGAACGCCAGCTTCACCTGCAACCGCTCGCGCCAAAAGAGTCT 173026 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267 | || || ||||| || || ||| || ||||||||||| | ||| | ||| || Sbjct 173025 TTCCCGTACCAGGAGGACCAACTAGAAGTACTCCCTTTGGAAGTTTGCCACCAAGAGTAG 172966 Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327 | || || || ||||||| ||||| || | || | ||| || | ||| ||||| | Sbjct 172965 AGAACTTTTCTGGATTCTTTAAGAATTCCACGAGATCTTGAAGCTCTTCTTTCGCCTCGT 172906 Query 289328 CACATCC 289334 | || || Sbjct 172905 CGCAACC 172899 >seq1428 Length=201619 Score = 93.3 bits (102), Expect = 1e-13 Identities = 177/261 (68%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | |||||| ||||||||||||||| || || || || || ||||| || || Sbjct 86228 CTTGACAAGACGACGTTGAATATAACCAGTTTCAGCAGTCTTCACTGCGGTATCGATGAG 86169 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAA 302702 ||| |||||||| |||| || ||||| || | ||| ||| || ||| | | | | Sbjct 86168 ACCTTCACGACCAGCCATGGCGTGGAAAAAGAACTCGGTTGGTGTTAACCCACGGAGATA 86109 Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAG 302762 ||| | ||||| || || | | || || || | || ||| || || || || || Sbjct 86108 TGAGTTTTCAACAAATCCTCTTGATTCTGGGGAGTAATCATCCTTTGTGAAATGAGGAAG 86049 Query 302763 GGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCA 302822 || | || | | ||| | || ||||||||||| || || ||||| || | | Sbjct 86048 TGTTCGGTATTTGAATCCGAAAGGAATACGCTTTCCTTCCACAGATTGCTGACCAACGAG 85989 Query 302823 CGAAATCATCTGCGAAATATT 302843 || | ||||||| || ||||| Sbjct 85988 CGCAGTCATCTGGGAGATATT 85968 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/141 (76%), Gaps = 5/141 (4%) Strand=Plus/Minus Query 301813 AGAATTTC-TTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGC 301871 |||||||| ||||| ||| || |||||| |||| || || ||| || | ||||| || Sbjct 87019 AGAATTTCCTTCAA-ACGAGGCACACCAAGGGTGACATT---CTTCGAAGACACACCTGC 86964 Query 301872 AAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931 ||| ||||||||||| || || | ||| |||| || || |||||| ||| || |||| Sbjct 86963 AAAATGGAAAGTATTGAGCGTCATTTGCGTAGCGGGTTCTCCAATAGATTGAGCAGCAAG 86904 Query 301932 CATACCAACCATTTCTCCTGG 301952 | |||||||||||||| || Sbjct 86903 GACTCCAACCATTTCTCCGGG 86883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471785277965618