Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq786 120 4e-21
seq908 105 8e-17
seq843 91.5 2e-12
>seq786
Length=120496
Score = 120 bits (132), Expect = 4e-21
Identities = 92/109 (84%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| |||||||||||||||||||||| || | || | || |||||| |||| ||||||
Sbjct 61298 GCCTCCAACTACCTCGACATCAAGCCACTTTTGGACGTCGGATGCAAGACTGTCGCCAAC 61357
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||||||| || ||||| ||||| ||||| || |||||||
Sbjct 61358 ATGATCAAGGGCAAGTCCCCAGAGGAAATCCGAAAGACATTCAACATCA 61406
>seq908
Length=77775
Score = 105 bits (116), Expect = 8e-17
Identities = 174/250 (70%), Gaps = 1/250 (0%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || | || ||| |||||| ||||||||||| || | || |||||
Sbjct 45593 GCCTTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATG 45534
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| |||||| ||| || ||||| || |
Sbjct 45533 TTCTCCATAAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAGGGAAAGG 45474
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| || || || ||||| ||||| ||||| || ||| ||| ||||||||||||||
Sbjct 45473 AGGAGACGATCAGCGACGAACTCAATGTATTGCTTCATCAGGTTGGCGTTCATGCCGAGA 45414
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || || || | ||| ||| ||||||| ||| ||||| || |||||| ||||
Sbjct 45413 AGTGCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATG 45354
Query 868931 ATCTGCCTGG 868940
| | ||||||
Sbjct 45353 A-CGGCCTGG 45345
Score = 95.1 bits (104), Expect = 1e-13
Identities = 172/251 (69%), Gaps = 3/251 (1%)
Strand=Plus/Minus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|||||||||||||| || ||| ||||| ||||| ||| | |||| | | ||||
Sbjct 44943 GAGTGGATGTTCTCCATCATGATTTGGAATCCGTAGAAGAATCGGGCCTCGGGGATTTGG 44884
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
|| || | |||| || || ||||||||| || || ||||| ||| |||||
Sbjct 44883 ACTTCACTGCTGAAGCGCTCGAGGAGGTTCTCGTTGACAATCCCGTCAGAGGCAGCGAAG 44824
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGTGG 869809
||||| |||||||| ||| |||| |||||||| ||| ||||| ||||| |
Sbjct 44823 AAAGCGAGGACGTGGGAGATGAAGTAACGCTCGTCATCGTTGAGCTTGTTGTTCCAGTCG 44764
Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869
| || | || || | ||| ||||| ||||||| || || |||||||| |||
Sbjct 44763 TGGAGATCCTTGGATAGATCAATCTCTTCGGCAGTCCAGAATGAAGCTTCGGCCTTCTTG 44704
Query 869870 TACATCTCCCA 869880
||||| | |||
Sbjct 44703 TACATTTGCCA 44693
>seq843
Length=104768
Score = 91.5 bits (100), Expect = 2e-12
Identities = 91/118 (77%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524
|||| || ||||| ||||| || || || || ||||||||| || ||||||||| ||
Sbjct 63679 TCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCATGGTTCTTTCGGA 63620
Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 1628582
||||||| | |||| || ||||||||||| ||||| |||||| ||| || || ||
Sbjct 63619 GGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACC 63562
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106998541133338
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |