Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq786 120 4e-21 seq908 105 8e-17 seq843 91.5 2e-12 >seq786 Length=120496 Score = 120 bits (132), Expect = 4e-21 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| |||||||||||||||||||||| || | || | || |||||| |||| |||||| Sbjct 61298 GCCTCCAACTACCTCGACATCAAGCCACTTTTGGACGTCGGATGCAAGACTGTCGCCAAC 61357 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| || ||||| ||||| ||||| || ||||||| Sbjct 61358 ATGATCAAGGGCAAGTCCCCAGAGGAAATCCGAAAGACATTCAACATCA 61406 >seq908 Length=77775 Score = 105 bits (116), Expect = 8e-17 Identities = 174/250 (70%), Gaps = 1/250 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || | || ||| |||||| ||||||||||| || | || ||||| Sbjct 45593 GCCTTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATG 45534 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| |||||| ||| || ||||| || | Sbjct 45533 TTCTCCATAAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAGGGAAAGG 45474 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || || || ||||| ||||| ||||| || ||| ||| |||||||||||||| Sbjct 45473 AGGAGACGATCAGCGACGAACTCAATGTATTGCTTCATCAGGTTGGCGTTCATGCCGAGA 45414 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | ||| ||| ||||||| ||| ||||| || |||||| |||| Sbjct 45413 AGTGCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATG 45354 Query 868931 ATCTGCCTGG 868940 | | |||||| Sbjct 45353 A-CGGCCTGG 45345 Score = 95.1 bits (104), Expect = 1e-13 Identities = 172/251 (69%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||| ||||| ||||| ||| | |||| | | |||| Sbjct 44943 GAGTGGATGTTCTCCATCATGATTTGGAATCCGTAGAAGAATCGGGCCTCGGGGATTTGG 44884 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || | |||| || || ||||||||| || || ||||| ||| ||||| Sbjct 44883 ACTTCACTGCTGAAGCGCTCGAGGAGGTTCTCGTTGACAATCCCGTCAGAGGCAGCGAAG 44824 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGTGG 869809 ||||| |||||||| ||| |||| |||||||| ||| ||||| ||||| | Sbjct 44823 AAAGCGAGGACGTGGGAGATGAAGTAACGCTCGTCATCGTTGAGCTTGTTGTTCCAGTCG 44764 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | || | || || | ||| ||||| ||||||| || || |||||||| ||| Sbjct 44763 TGGAGATCCTTGGATAGATCAATCTCTTCGGCAGTCCAGAATGAAGCTTCGGCCTTCTTG 44704 Query 869870 TACATCTCCCA 869880 ||||| | ||| Sbjct 44703 TACATTTGCCA 44693 >seq843 Length=104768 Score = 91.5 bits (100), Expect = 2e-12 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524 |||| || ||||| ||||| || || || || ||||||||| || ||||||||| || Sbjct 63679 TCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCATGGTTCTTTCGGA 63620 Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 1628582 ||||||| | |||| || ||||||||||| ||||| |||||| ||| || || || Sbjct 63619 GGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACC 63562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106998541133338