Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq843 158 1e-33 seq1406 109 5e-19 seq1483 91.5 1e-13 seq861 87.8 2e-12 >seq843 Length=104768 Score = 158 bits (174), Expect = 1e-33 Identities = 610/944 (65%), Gaps = 31/944 (3%) Strand=Plus/Minus Query 139080 AATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGC 139139 || ||| || | ||||| || || || || || || | | ||| ||||| ||||| | Sbjct 64026 AAGCGATGCCAAATTGCAAACAGCGACCTCATCTGGTGCACAGTACTCGACGATTTCAGT 63967 Query 139140 ACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGC 139199 ||||| || | ||| ||||| | ||| | ||| ||||| |||||||| ||||| Sbjct 63966 GCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGC 63907 Query 139200 ATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAA 139259 ||| ||||||||||| | || | || || || ||| | ||| | || | | | Sbjct 63906 ATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCAAGGATAGAGT--AC 63849 Query 139260 CAAGTCCCTAGCTTGTA---TTTGACGCACGT---AAAGTT--CGTCGCGCTCGTACTTT 139311 ||| ||||| | ||||| || | | | || | || |||||| || Sbjct 63848 CAA------AGCTTTTGGGCTTTGATGCTCTTGCGACCCTTGCCCTCAGACTCGTATTTC 63795 Query 139312 TCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGG 139370 || || | | ||||| |||| |||||||| | || | | | | |||||| || ||| Sbjct 63794 TCATACAACGCTTCGAACTCGT-CACCGTAGACATCGGCCAAACCAGGACACTCGTTAGG 63736 Query 139371 ACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCA 139430 ||||| | | ||| || ||| | || ||| ||||||| ||||| |||||||| Sbjct 63735 GCACATCAATGTCCAGTCGAGATTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCA 63676 Query 139431 CAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTC--ATG 139488 | |||| | | | ||| || || || ||| || ||| | | |||| | | Sbjct 63675 GAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCC-ATGGTTC-TTTCGGAGG 63618 Query 139489 TTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTC 139548 | ||||| || ||||| || ||||||||||| || || |||||||| | || || Sbjct 63617 TCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACCAGGA 63558 Query 139549 CGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGC 139605 || ||| ||||||||||| || | || | | || ||||| || | | ||| || Sbjct 63557 CGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTGAAAACTCTGAGCATAGGA 63498 Query 139606 TCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCA 139665 | | ||| | | ||||||| || | ||| | | | || |||| Sbjct 63497 ACGATTCCGTTGGAGTTTCCGTTAGTACCGGCGATATAAGCGCCGGTCGCACGGATTCTG 63438 Query 139666 TGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTC 139725 || ||||||| ||||| || || || || || || | ||||| ||| || Sbjct 63437 TGAACATTGAGACCGATACCACCAGCATTCTTTGAAATCATGGCGCAAATCTTTAACGTG 63378 Query 139726 TCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGC 139785 ||||| ||||| |||||||| |||| ||| || || ||||| || |||||||| Sbjct 63377 TCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGGATGAAAGTTGT 63318 Query 139786 GGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAAC-ATTTGTTTCGA 139844 | || ||||| ||||| || || || || ||||| ||||| ||||| | || Sbjct 63317 GCCTGTGGTGTGCCAGCTGCGAAGAGGGTTGGGGAGGCGTGGGTGAAGTATTTGCTG-GA 63259 Query 139845 CATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGAC 139904 |||||| | ||| || |||||||| | | |||||| ||||| || ||||| | || Sbjct 63258 CATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACCGTGAATTCCGACCGCAAC 63199 Query 139905 TCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATA--A 139962 ||||| | |||||| || |||||| | | ||| |||| ||||| | Sbjct 63198 ACGCATAATCATATGCTGTGGACGTTCGCAGATCTTGCCATCGAGGCGGAGGAGATATGA 63139 Query 139963 CCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 || ||| ||||||||| | || ||||| |||||||||||| Sbjct 63138 TCG--CTCGAGGGTCTTGAAACCGAAGTATTGATAGTTGAAATC 63097 >seq1406 Length=252419 Score = 109 bits (120), Expect = 5e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 |||||||| ||||| || || || || || | ||||||| | || | || || Sbjct 214619 ACCGGTAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACCATCGATAACGTCAAGTCC 214678 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| || ||||| || || ||||| |||||||||||||||||||| || Sbjct 214679 AAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAGCAACGTTTGATCTTTGCCGGAAAG 214738 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| ||||| | | | || ||||| ||||| || ||||| || || || ||| Sbjct 214739 CAGCTCGAGGACGGACGTACTCTATCTGATTACAACATCCAGAAGGAGTCCACCCTCCAC 214798 Query 24908 TTGGT 24912 |||| Sbjct 214799 CTGGT 214803 Score = 102 bits (112), Expect = 7e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||| || | || || || |||||||| | ||||| || | | Sbjct 215334 ATGCAGATCTTCGTTAAGACTTTGACGGGCAAGACTATTACATTAGAAGTTGAGTCTTCG 215393 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||| || || || || || || || |||||| Sbjct 215394 GACACCATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATCCCACCAGATCAA 215453 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCA--GATTATA 24881 || || ||||| || ||||| || || ||||||| | | ||| ||| ||||||| Sbjct 215454 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGA-TGGCCGTACA-CTCAGCGATTATA 215511 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||| |||||||| || | ||||||||| | || |||| ||||| Sbjct 215512 ACATCCAAAAGGAGAGCACTTTGCACTTGGTGCTTCGCCTGCGTGGAGG 215560 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 ||||| || || || || ||||| || || || | || || | || | || || Sbjct 214902 ACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGATACTATCGACAACGTCAAGTCG 214961 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||| |||||||| || || || || || || ||||| | | |||||||| ||||| Sbjct 214962 AAGATTCAAGACAAGGAGGGCATCCCACCTGACCAACAGAGACTTATCTTTGCTGGGAAG 215021 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || || ||||| | | | | || || || || || ||||||||||| || |||||| Sbjct 215022 CAACTTGAGGACGGCCGCACCCTTTCGGACTACAATATCCAAAAGGAATCTACTCTACAC 215081 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 ||||| | ||| | || || || Sbjct 215082 TTGGTTCTCCGACTCCGTGGTGG 215104 >seq1483 Length=199378 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || ||||| || ||||| | ||||| || | | |||||| | || | Sbjct 28808 AAGACCCTTACGGGTAAGACCATTACATTGGAAGTTGAGTCTTCGGACACAATTGATAAT 28749 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||| ||||| || || || || || || ||||||||||||||||| Sbjct 28748 GTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAACAACGTTTGATCTTC 28689 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGG 24893 || || || || || |||||| | | | |||||||| ||||| ||||||| Sbjct 28688 GCTGGAAAGCAACTCGAGGATGGACGCACTCTTTCAGATTACAACATCCAAAAGG 28634 >seq861 Length=344942 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 || || || ||||| || ||||| || ||| | | ||||| | || | || ||| Sbjct 25378 ACGGGCAAGACTATCACCCTCGAGGTCGAATCGAGTGACACGATTGATAATGTCAAATCC 25437 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| || ||||| || || ||||||||||| | ||||| ||||| ||| Sbjct 25438 AAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAACAACGCCTAATCTTCGCCGGCAAA 25497 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || || || || | | | | || || || ||||| || ||||| || || || || Sbjct 25498 CAACTCGAAGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCAACCCTTCAT 25557 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 | || || || | || ||||| Sbjct 25558 CTCGTCTTACGTCTACGTGGAGG 25580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449887960943920