Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq908 111 2e-18 seq786 111 2e-18 >seq908 Length=77775 Score = 111 bits (122), Expect = 2e-18 Identities = 180/258 (70%), Gaps = 1/258 (0%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 ||||||| ||||| || || | || ||| |||||| ||||||||||| || | | Sbjct 45601 TGACGCCGGCCTTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAA 45542 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | ||| |||||||| | ||| |||||| |||| Sbjct 45541 GGGAGATGTTCTCCATAAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGA 45482 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | || || || || || |||||||| |||||||| || ||| ||| |||||||| Sbjct 45481 GGGAAAGGAGGAGACGATCAGCGACGAACTCAATGTATTGCTTCATCAGGTTGGCGTTCA 45422 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||||| || || || || | ||| | | ||||||| ||| ||||| || |||| Sbjct 45421 TGCCGAGAAGTGCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCT 45362 Query 794131 CGATGATGATCTGCCTGG 794148 || |||||| | |||||| Sbjct 45361 CGGTGATGA-CGGCCTGG 45345 >seq786 Length=120496 Score = 111 bits (122), Expect = 2e-18 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| |||||||||||||||||||||| || | || | || |||||||| || |||||| Sbjct 61298 GCCTCCAACTACCTCGACATCAAGCCACTTTTGGACGTCGGATGCAAGACTGTCGCCAAC 61357 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| || ||||| ||||| ||||| || ||||||| Sbjct 61358 ATGATCAAGGGCAAGTCCCCAGAGGAAATCCGAAAGACATTCAACATCA 61406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916064074002446