Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq861 105 4e-18 seq1406 100 2e-16 seq1483 87.8 1e-12 >seq861 Length=344942 Score = 105 bits (116), Expect = 4e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34768 GACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTC 34827 ||| || |||| ||| ||||||||| ||||| |||||||| ||| |||| | || || Sbjct 25563 GACGAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCTTC 25504 Query 34828 CAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTT 34887 ||||| || ||||||||||| || ||||| || || | || | ||||||||||| | Sbjct 25503 GAGTTGTTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGGAATTCCCTCCTTGTCCTG 25444 Query 34888 TATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTT 34947 || || |||||| | |||| ||| | | ||||| || | ||| || ||||| Sbjct 25443 GATCTTGGATTTGACATTATCAATCGTGTCACTCGATTCGACCTCGAGGGTGATAGTCTT 25384 Query 34948 TCCCGTGA 34955 ||||||| Sbjct 25383 GCCCGTGA 25376 >seq1406 Length=252419 Score = 100 bits (110), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 8/194 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | |||| ||||||||| ||||| || || ||||| | || | || Sbjct 214806 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGATAGAGTACGTCCGTCC 214747 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||||||||| ||||||| |||||||| ||| | || | ||||||||||| Sbjct 214746 TCGAGCTGCTTTCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATTCCCTCCTTGTCC 214687 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| | ||||||| || | ||| || |||| ||| || Sbjct 214686 TGGATCTTGGACTTGAC----GTTATCGATGGTGTCGGACGACTCCACCTCAAGGGTGAT 214631 Query 34942 GGTCTTTCCCGTGA 34955 ||||| || |||| Sbjct 214630 AGTCTTACCGGTGA 214617 Score = 95.1 bits (104), Expect = 8e-15 Identities = 166/238 (70%), Gaps = 9/238 (4%) Strand=Plus/Minus Query 34745 TCATT-TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATA 34803 ||||| |||||| | || | || |||| ||| | ||||||||||| || |||||||| Sbjct 215567 TCATTGTCCTCCACGCAGGCGAAGCACCAAGTGCAAAGTGCTCTCCTTTTGGATGTTATA 215508 Query 34804 GTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 || || | || |||| |||| |||||| |||||||| |||| ||| || || || Sbjct 215507 ATCGCTGAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATC 215448 Query 34864 TTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCAT 34919 | | || | |||||||| || | || ||| ||||| || |||| || || Sbjct 215447 TGGTGGGATACCCTCCTTATCCTGGATCTTTGACTTGAC--AT--TATCAATGGTGTCCG 215392 Query 34920 TGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | ||| || || | || || ||||| ||||| | ||||| || ||||||||||| Sbjct 215391 AAGACTCAACTTCTAATGTAATAGTCTTGCCCGTCAAAGTCTTAACGAAGATCTGCAT 215334 Score = 84.2 bits (92), Expect = 1e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| || || || |||||||| ||| |||| | || || |||||||| || || ||| Sbjct 215068 TCCTTTTGGATATTGTAGTCCGAAAGGGTGCGGCCGTCCTCAAGTTGCTTCCCAGCAAAG 215009 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || |||| || ||||| | || | ||||||||||| | || || |||||| Sbjct 215008 ATAAGTCTCTGTTGGTCAGGTGGGATGCCCTCCTTGTCTTGAATCTTCGACTTGACGTTG 214949 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || || ||| || || | ||| |||||||| || || | |||||| ||| Sbjct 214948 TCGATAGTATCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACA 214889 Query 34967 A 34967 | Sbjct 214888 A 214888 >seq1483 Length=199378 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/210 (70%), Gaps = 11/210 (5%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 |||| || ||||| || || || || |||| |||| || ||||||||||| ||||||| Sbjct 28634 CCTTTTGGATGTTGTAATCTGAAAGAGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGA 28693 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| ||||| ||||| | || | ||||||||||| | || || ||||| || Sbjct 28694 TCAAACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT- 28750 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 |||| || || | ||| || || | || |||||||| ||||| |||||||| Sbjct 28751 -TATCAATTGTGTCCGAAGACTCAACTTCCAATGTAATGGTCTTACCCGTAAGGGTCTTG 28809 Query 34964 ACAAAGATCTGCATGATAGTGGACTAGTCG 34993 || ||| ||| |||| | || |||||| Sbjct 28810 ACGAAG--CTG-TTGATGGCAGATTAGTCG 28836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325685996480966