Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq962 116 3e-20
seq291 116 3e-20
seq1428 87.8 1e-11
>seq962
Length=65715
Score = 116 bits (128), Expect = 3e-20
Identities = 470/733 (64%), Gaps = 8/733 (1%)
Strand=Plus/Plus
Query 282152 TTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAAATCTTCACCTC 282209
||||||||||| ||| ||| | ||| | ||||| | || || ||||| ||||| |
Sbjct 59188 TTTCTCTTGAACTCTGAAACGAA--ATGGTTGACAAGTCTGTTGTCGAAATCCTCACCAC 59245
Query 282210 CCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAA 282269
|||| | ||||| |||| || | | |||| || | || || || | | ||| |
Sbjct 59246 CCAAGTGAGTATCACCTGCGGTGGACTTGACTTCAAAGATACCCTCCTCGATGGTCAAGA 59305
Query 282270 GAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTT 282329
| | ||||| ||||| ||||| | |||||| || || || || || ||
Sbjct 59306 GTGAGACATCGAAAGTTCCTCCACCAAGATCAAAGATGAGAACGTTTCGCTCACCCTCAA 59365
Query 282330 GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAA 282389
|| || || ||||| || |||| || || || || || || || || |||| | ||
Sbjct 59366 CCTTCTTGTCGAGACCGTATGCAATGGCGGCTGCGGTAGGCTCGTTGATGATTCGAAGAA 59425
Query 282390 CATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAAT 282449
| || |||||||| ||| || || || || |||||||| | |||||||||| |||| |
Sbjct 59426 CGTTGAGACCAGCGATTAAACCGGCGTCCTTGGTGGCTTGACGTTGTGAATCGGTAAAGT 59485
Query 282450 ATGCAGGAACAGTAATAACGGCATCTGTT-ACTTCTTTTCCAATATAAGCGCTTGCTGTT 282508
|||| || || || | ||||| | |||| || | |||| ||||| || ||
Sbjct 59486 ATGCTGGGACGGTGACGACGGCGT-TGTTGACGGTTCCACCAAGGTAAGCCTCGGCGGTC 59544
Query 282509 TGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTC- 282567
| | |||| || || ||||| || || |||| ||||| | ||||||| ||
Sbjct 59545 TCTCTCATCTTGACCAAGATCATGGAAGAGATTTCCTCTGGTGTGAATTGCTTCTTCTCG 59604
Query 282568 ATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCA 282627
|||| | | || | | | || || |||| | | || | || || |
Sbjct 59605 CCCTTGAACTCAATCTCGACGACA-GGCTTTCCACCACGGTCGAGGACGGTGAAGGGAAA 59663
Query 282628 ATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGC 282687
| |||||||| | || || ||||| || | | || || | || |||||
Sbjct 59664 GTGCTTCATATCAGCCTGGACTTCCTGGTCTGCGAACTTACGTCCGATCAGACGCTTTGC 59723
Query 282688 ATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAG 282747
|| || | || |||| || || | || |||| | || || |||||||| |||||
Sbjct 59724 GTCGAAGACTGTGTTGGCGGGGTTCATGGCGACTTGGTTCTTTGCGGCATCTCCGATCAG 59783
Query 282748 ATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGC 282807
| | || || ||||| || | ||| | || || || || || || || || || || ||
Sbjct 59784 ACGCTCGGTATCTGTGAAGGCAACGAAGGAAGGGGTGGTTCGGTTTCCCTGGTCGTTGGC 59843
Query 282808 AATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATC 282867
||||| |||| | | ||| | | | | ||||||||| | || ||||| | |||
Sbjct 59844 GATAATCTCAATTCGATCATCTCGATAGATACCTACACAGGAGTAGGTGGTTCCAAGATC 59903
Query 282868 AATACCAATAGCA 282880
||||| || |||
Sbjct 59904 GATACCTATGGCA 59916
Score = 109 bits (120), Expect = 4e-18
Identities = 313/479 (65%), Gaps = 3/479 (1%)
Strand=Plus/Plus
Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500
|| || |||||||| | |||||| ||||| || ||||| ||||| || | | ||||||
Sbjct 58418 ATTCCGTTGGCATCGACATCAAAGGTGACCTCGATTTGTGGGACACCACGTGGTGCAGGT 58477
Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560
||||| || | | |||| | |||| | || || || || ||| || || |||
Sbjct 58478 GGGATACCAGTGAGCTCAAATTTACCCAAAAGGTTGTTGTCCTTGGTGCGTTGACGCTCA 58537
Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620
|||||||| | ||||||| || ||| ||| || || || | || | || ||| |
Sbjct 58538 CCCTCGAAGACTTGGATAAGCACACCAGGTTGGTTGTCGGAGAAGGTGGAGAAGACTTCG 58597
Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680
|| || || || || || |||||||| || | |||||||| ||||||||
Sbjct 58598 GACTTCTTGGTTGGGATGGTGGTGTTTCTTGGGATGAGCTTGGTCATTTGTCCACCAGCA 58657
Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 281738
|| || | ||| || || | || | |||||| | |||| || | || | | ||
Sbjct 58658 GTCTCGATACCGAGGGACAATGGCGCGACATCGAGGAGGAGGATCTCGTTGGTGGACTTG 58717
Query 281739 CATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797
| | || | || ||||| || || || | |||||||||||||||||||| ||
Sbjct 58718 GAAGAGGTGTCTCCGGAGAGAATGGCAGCCTGGACGGCAGCACCATATGCAACAGCCTCG 58777
Query 281798 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT 281857
||||| || | | | ||| | | || || ||||| ||| | || || | |
Sbjct 58778 TCAGGGTTGATGGACTTGTTTGGCTCCTTGCCGTTGAAGTAATCGGTAATGAGCTTTTGG 58837
Query 281858 ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 281916
| | || ||||||| || ||||| || | || || || || |||| ||||| ||
Sbjct 58838 ATTCTGGGGATACGAGTGGAACCTCCGACGAGGACGATCTCGTGAACCTTGGATTTGTC 58896
>seq291
Length=157447
Score = 116 bits (128), Expect = 3e-20
Identities = 109/139 (78%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394
|| ||||| || || |||| |||||||||||||| || |||| | ||||| ||| ||
Sbjct 22053 TTCTCAAGTCCGTATGCAAGCGCAGCAGCAGTTGGCTCGTTAACCACTCTCAGAACGTTG 21994
Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454
|| || |||||| || ||||| || |||||||| | |||||||||||| || ||||||
Sbjct 21993 AGTCCGGCAATTTGACCAGCATCCTTGGTGGCTTGACGTTGTGAATCGTTGAAGTATGCA 21934
Query 282455 GGAACAGTAATAACGGCAT 282473
|| || || | ||||||||
Sbjct 21933 GGGACTGTGACAACGGCAT 21915
>seq1428
Length=201619
Score = 87.8 bits (96), Expect = 1e-11
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192
|| || || ||||| | |||||||||||||||||| | || |||| || | || |||
Sbjct 86133 GAGTTCTTTTTCCACGCCATGGCTGGTCGTGAAGGTCTCATCGATACCGCAGTGAAGACT 86192
Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGAA 435252
||||| ||||||||||||||| | ||||||||| ||||| ||| | | ||
Sbjct 86193 GCTGAAACTGGTTATATTCAACGTCGTCTTGTCAAGGCACTTGAGGATGTCATTGCTAAA 86252
Query 435253 TATGATGGTACAGTGAGAAAT 435273
|||||||| || || |||||
Sbjct 86253 TATGATGGAACTGTCCGAAAT 86273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740546249843364
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |