Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq962 116 3e-20 seq291 116 3e-20 seq1428 87.8 1e-11 >seq962 Length=65715 Score = 116 bits (128), Expect = 3e-20 Identities = 470/733 (64%), Gaps = 8/733 (1%) Strand=Plus/Plus Query 282152 TTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAAATCTTCACCTC 282209 ||||||||||| ||| ||| | ||| | ||||| | || || ||||| ||||| | Sbjct 59188 TTTCTCTTGAACTCTGAAACGAA--ATGGTTGACAAGTCTGTTGTCGAAATCCTCACCAC 59245 Query 282210 CCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAA 282269 |||| | ||||| |||| || | | |||| || | || || || | | ||| | Sbjct 59246 CCAAGTGAGTATCACCTGCGGTGGACTTGACTTCAAAGATACCCTCCTCGATGGTCAAGA 59305 Query 282270 GAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTT 282329 | | ||||| ||||| ||||| | |||||| || || || || || || Sbjct 59306 GTGAGACATCGAAAGTTCCTCCACCAAGATCAAAGATGAGAACGTTTCGCTCACCCTCAA 59365 Query 282330 GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAA 282389 || || || ||||| || |||| || || || || || || || || |||| | || Sbjct 59366 CCTTCTTGTCGAGACCGTATGCAATGGCGGCTGCGGTAGGCTCGTTGATGATTCGAAGAA 59425 Query 282390 CATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAAT 282449 | || |||||||| ||| || || || || |||||||| | |||||||||| |||| | Sbjct 59426 CGTTGAGACCAGCGATTAAACCGGCGTCCTTGGTGGCTTGACGTTGTGAATCGGTAAAGT 59485 Query 282450 ATGCAGGAACAGTAATAACGGCATCTGTT-ACTTCTTTTCCAATATAAGCGCTTGCTGTT 282508 |||| || || || | ||||| | |||| || | |||| ||||| || || Sbjct 59486 ATGCTGGGACGGTGACGACGGCGT-TGTTGACGGTTCCACCAAGGTAAGCCTCGGCGGTC 59544 Query 282509 TGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTC- 282567 | | |||| || || ||||| || || |||| ||||| | ||||||| || Sbjct 59545 TCTCTCATCTTGACCAAGATCATGGAAGAGATTTCCTCTGGTGTGAATTGCTTCTTCTCG 59604 Query 282568 ATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCA 282627 |||| | | || | | | || || |||| | | || | || || | Sbjct 59605 CCCTTGAACTCAATCTCGACGACA-GGCTTTCCACCACGGTCGAGGACGGTGAAGGGAAA 59663 Query 282628 ATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGC 282687 | |||||||| | || || ||||| || | | || || | || ||||| Sbjct 59664 GTGCTTCATATCAGCCTGGACTTCCTGGTCTGCGAACTTACGTCCGATCAGACGCTTTGC 59723 Query 282688 ATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAG 282747 || || | || |||| || || | || |||| | || || |||||||| ||||| Sbjct 59724 GTCGAAGACTGTGTTGGCGGGGTTCATGGCGACTTGGTTCTTTGCGGCATCTCCGATCAG 59783 Query 282748 ATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGC 282807 | | || || ||||| || | ||| | || || || || || || || || || || || Sbjct 59784 ACGCTCGGTATCTGTGAAGGCAACGAAGGAAGGGGTGGTTCGGTTTCCCTGGTCGTTGGC 59843 Query 282808 AATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATC 282867 ||||| |||| | | ||| | | | | ||||||||| | || ||||| | ||| Sbjct 59844 GATAATCTCAATTCGATCATCTCGATAGATACCTACACAGGAGTAGGTGGTTCCAAGATC 59903 Query 282868 AATACCAATAGCA 282880 ||||| || ||| Sbjct 59904 GATACCTATGGCA 59916 Score = 109 bits (120), Expect = 4e-18 Identities = 313/479 (65%), Gaps = 3/479 (1%) Strand=Plus/Plus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 || || |||||||| | |||||| ||||| || ||||| ||||| || | | |||||| Sbjct 58418 ATTCCGTTGGCATCGACATCAAAGGTGACCTCGATTTGTGGGACACCACGTGGTGCAGGT 58477 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || | | |||| | |||| | || || || || ||| || || ||| Sbjct 58478 GGGATACCAGTGAGCTCAAATTTACCCAAAAGGTTGTTGTCCTTGGTGCGTTGACGCTCA 58537 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 |||||||| | ||||||| || ||| ||| || || || | || | || ||| | Sbjct 58538 CCCTCGAAGACTTGGATAAGCACACCAGGTTGGTTGTCGGAGAAGGTGGAGAAGACTTCG 58597 Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 || || || || || || |||||||| || | |||||||| |||||||| Sbjct 58598 GACTTCTTGGTTGGGATGGTGGTGTTTCTTGGGATGAGCTTGGTCATTTGTCCACCAGCA 58657 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 281738 || || | ||| || || | || | |||||| | |||| || | || | | || Sbjct 58658 GTCTCGATACCGAGGGACAATGGCGCGACATCGAGGAGGAGGATCTCGTTGGTGGACTTG 58717 Query 281739 CATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 | | || | || ||||| || || || | |||||||||||||||||||| || Sbjct 58718 GAAGAGGTGTCTCCGGAGAGAATGGCAGCCTGGACGGCAGCACCATATGCAACAGCCTCG 58777 Query 281798 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT 281857 ||||| || | | | ||| | | || || ||||| ||| | || || | | Sbjct 58778 TCAGGGTTGATGGACTTGTTTGGCTCCTTGCCGTTGAAGTAATCGGTAATGAGCTTTTGG 58837 Query 281858 ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 281916 | | || ||||||| || ||||| || | || || || || |||| ||||| || Sbjct 58838 ATTCTGGGGATACGAGTGGAACCTCCGACGAGGACGATCTCGTGAACCTTGGATTTGTC 58896 >seq291 Length=157447 Score = 116 bits (128), Expect = 3e-20 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || ||||| || || |||| |||||||||||||| || |||| | ||||| ||| || Sbjct 22053 TTCTCAAGTCCGTATGCAAGCGCAGCAGCAGTTGGCTCGTTAACCACTCTCAGAACGTTG 21994 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 || || |||||| || ||||| || |||||||| | |||||||||||| || |||||| Sbjct 21993 AGTCCGGCAATTTGACCAGCATCCTTGGTGGCTTGACGTTGTGAATCGTTGAAGTATGCA 21934 Query 282455 GGAACAGTAATAACGGCAT 282473 || || || | |||||||| Sbjct 21933 GGGACTGTGACAACGGCAT 21915 >seq1428 Length=201619 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 || || || ||||| | |||||||||||||||||| | || |||| || | || ||| Sbjct 86133 GAGTTCTTTTTCCACGCCATGGCTGGTCGTGAAGGTCTCATCGATACCGCAGTGAAGACT 86192 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGAA 435252 ||||| ||||||||||||||| | ||||||||| ||||| ||| | | || Sbjct 86193 GCTGAAACTGGTTATATTCAACGTCGTCTTGTCAAGGCACTTGAGGATGTCATTGCTAAA 86252 Query 435253 TATGATGGTACAGTGAGAAAT 435273 |||||||| || || ||||| Sbjct 86253 TATGATGGAACTGTCCGAAAT 86273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740546249843364