Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1406 136 8e-27 >seq1406 Length=252419 Score = 136 bits (150), Expect = 8e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| ||||| ||||||||||| || || ||||| || || || || | | ||| Sbjct 215092 CGGAGAACCAAGTGTAGAGTAGATTCCTTTTGGATATTGTAGTCCGAAAGGGTGCGGCCG 215033 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || ||||| || ||||||||||| ||||| ||||| || || || || || ||||| Sbjct 215032 TCCTCAAGTTGCTTCCCAGCAAAGATAAGTCTCTGTTGGTCAGGTGGGATGCCCTCCTTG 214973 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||||||| | || || || || || ||||| | || || || | || || Sbjct 214972 TCTTGAATCTTCGACTTGACGTTGTCGATAGTATCCGAGGACTCAACCTCGAGGGTGATG 214913 Query 82776 GTCTTGCCTGTCAACGTCTTTACAA 82800 |||||||| ||||| ||||| |||| Sbjct 214912 GTCTTGCCGGTCAAGGTCTTGACAA 214888 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | || || || || ||||||| ||| || || || || |||||||| Sbjct 215560 CCTCCACGCAGGCGAAGCACCAAGTGCAAAGTGCTCTCCTTTTGGATGTTATAATCGCTG 215501 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || | ||| || || || || || | || ||||||||||| || Sbjct 215500 AGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGGG 215441 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||| || ||||||| || ||||| ||||| || || || || ||| Sbjct 215440 ATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATGGTGTCCGAAGACTCAACT 215381 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || |||||||| ||||| ||||| || || |||||||| Sbjct 215380 TCTAATGTAATAGTCTTGCCCGTCAAAGTCTTAACGAAGATCTGCAT 215334 Score = 98.7 bits (108), Expect = 2e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | ||| || || || || ||||| || || ||||||| Sbjct 214823 TACCGCCACGAAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAG 214764 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||||| | | ||||| || || || ||||| |||||||| | | ||| |||||||| | Sbjct 214763 ATAGAGTACGTCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAAACGTTGCTGATCTGGGG 214704 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 | ||||| ||||| || || ||||| | || || || || || || || Sbjct 214703 GAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTATCGATGGTGTC 214655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981805638461046