Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq843 143 6e-29
>seq843
Length=104768
Score = 143 bits (158), Expect = 6e-29
Identities = 512/789 (65%), Gaps = 25/789 (3%)
Strand=Plus/Plus
Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363
|| || |||||||| || || || || | ||| | || || || ||||| |||||
Sbjct 63112 TACTTCGGTTTCAAGACCCTCGAGCGATCATATCTCCTCCGCCTCGATGGCAAGATCTGC 63171
Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423
|||||||| || || ||| || | ||||||||| | || ||||| || | ||||| |
Sbjct 63172 GAACGTCCACAGCATATGATTATGCGTGTTGCGGTCGGAATTCACGGTGAGGATATCGAG 63231
Query 110424 GCTGTTATTGAATGTTA-----TGATGTATTAAGTAAAAAGAAAGCT--ATTCATGCTAC 110476
|||| || || || |||||| || ||| | || | || || |
Sbjct 63232 GCTGCCATCGAGACCTACAACTTGATGTCC--AGCAAATA-----CTTCACCCACGCCTC 63284
Query 110477 TCCTACCCTATTTAACGCAGGAACTAATGGAGG-ACAATTGGCTTCTTGCTTTCTTCTAG 110535
|| ||||| || || || || | ||| |||| | | || ||||| ||| | |
Sbjct 63285 CCCAACCCTCTTCGCAGCTGGCAC-ACCACAGGCACAACTTTCATCCTGCTTCCTTATCG 63343
Query 110536 GAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTC--TTAT 110593
|| || || || ||||| |||||||| || | ||||||| ||| | | ||
Sbjct 63344 ACATGAAGGAGGACAGCATTGATGGTATTTACGACACG-TTAAAGATT-TGCGCCATGAT 63401
Query 110594 TTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAA 110653
||| || || |||| || || ||| | | ||||| || || | | || || |
Sbjct 63402 TTCAAAGAATGCTGGTGGTATCGGTCTCAATGTTCACAGAATCCGTGCGACCGGCGCTTA 63461
Query 110654 TATCGCAACAGCGAAGGGTG-CTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACG 110712
|||||| | || || || |||| ||| | ||||| ||| | ||||| ||||||
Sbjct 63462 TATCGCCGGTACTAACGGAAACTCCAAC-GGAATCGTTCCTATGCTCAGAGTTTTCAACA 63520
Query 110713 ACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATC 110769
|||| || | |||||| ||||||||||| ||| | ||| | || || ||||| |
Sbjct 63521 ACACCGCCAGATATGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCTTTCGCCATCTACC 63580
Query 110770 TCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTG 110829
| || || ||||| | ||| | || || ||| | || || || || || || ||| |
Sbjct 63581 TTGAGCCATGGCACGCCGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCATGGAAAGG 63640
Query 110830 AAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAAC 110889
| || | || |||||| | || || || | |||||| ||||| | |||||||| |
Sbjct 63641 AGGAGGTTCGTGCCCGTGATCTCTTCTACGCTCTCTGGATTCCAGATCTCTTCATGAAGC 63700
Query 110890 GTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTG 110949
||||| || | ||| | ||| | | ||||| ||| | | ||||||| | | |
Sbjct 63701 GTGTTGAAAAGAATCTCGACTGGACATTGATGTGCCCTAACGAGTGTCCTGGTTTGGCCG 63760
Query 110950 ATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTC 111009
|||| || || | ||||| |||| | || || ||||| || || |||||| ||
Sbjct 63761 ATGTCTACGGTGACGAGTTCGAAGCGTTGTATGAGAAATACGAGTCTGAGGGCAAGGGTC 63820
Query 111010 GCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTG 111069
|||| || ||| ||| | ||||||| | |||||||| | ||| ||| || |
Sbjct 63821 GCAAGAGCATCAAAGCCCAAAAGCTTTGGTACTCTATCCTTGAGGCTCAAACTGAGACCG 63880
Query 111070 GAACTCCTT 111078
||| ||||
Sbjct 63881 GAAACCCTT 63889
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186786736849154
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |