Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq843 143 6e-29 >seq843 Length=104768 Score = 143 bits (158), Expect = 6e-29 Identities = 512/789 (65%), Gaps = 25/789 (3%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 || || |||||||| || || || || | ||| | || || || ||||| ||||| Sbjct 63112 TACTTCGGTTTCAAGACCCTCGAGCGATCATATCTCCTCCGCCTCGATGGCAAGATCTGC 63171 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 |||||||| || || ||| || | ||||||||| | || ||||| || | ||||| | Sbjct 63172 GAACGTCCACAGCATATGATTATGCGTGTTGCGGTCGGAATTCACGGTGAGGATATCGAG 63231 Query 110424 GCTGTTATTGAATGTTA-----TGATGTATTAAGTAAAAAGAAAGCT--ATTCATGCTAC 110476 |||| || || || |||||| || ||| | || | || || | Sbjct 63232 GCTGCCATCGAGACCTACAACTTGATGTCC--AGCAAATA-----CTTCACCCACGCCTC 63284 Query 110477 TCCTACCCTATTTAACGCAGGAACTAATGGAGG-ACAATTGGCTTCTTGCTTTCTTCTAG 110535 || ||||| || || || || | ||| |||| | | || ||||| ||| | | Sbjct 63285 CCCAACCCTCTTCGCAGCTGGCAC-ACCACAGGCACAACTTTCATCCTGCTTCCTTATCG 63343 Query 110536 GAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTC--TTAT 110593 || || || || ||||| |||||||| || | ||||||| ||| | | || Sbjct 63344 ACATGAAGGAGGACAGCATTGATGGTATTTACGACACG-TTAAAGATT-TGCGCCATGAT 63401 Query 110594 TTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAA 110653 ||| || || |||| || || ||| | | ||||| || || | | || || | Sbjct 63402 TTCAAAGAATGCTGGTGGTATCGGTCTCAATGTTCACAGAATCCGTGCGACCGGCGCTTA 63461 Query 110654 TATCGCAACAGCGAAGGGTG-CTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACG 110712 |||||| | || || || |||| ||| | ||||| ||| | ||||| |||||| Sbjct 63462 TATCGCCGGTACTAACGGAAACTCCAAC-GGAATCGTTCCTATGCTCAGAGTTTTCAACA 63520 Query 110713 ACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATC 110769 |||| || | |||||| ||||||||||| ||| | ||| | || || ||||| | Sbjct 63521 ACACCGCCAGATATGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCTTTCGCCATCTACC 63580 Query 110770 TCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTG 110829 | || || ||||| | ||| | || || ||| | || || || || || || ||| | Sbjct 63581 TTGAGCCATGGCACGCCGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCATGGAAAGG 63640 Query 110830 AAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAAC 110889 | || | || |||||| | || || || | |||||| ||||| | |||||||| | Sbjct 63641 AGGAGGTTCGTGCCCGTGATCTCTTCTACGCTCTCTGGATTCCAGATCTCTTCATGAAGC 63700 Query 110890 GTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTG 110949 ||||| || | ||| | ||| | | ||||| ||| | | ||||||| | | | Sbjct 63701 GTGTTGAAAAGAATCTCGACTGGACATTGATGTGCCCTAACGAGTGTCCTGGTTTGGCCG 63760 Query 110950 ATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTC 111009 |||| || || | ||||| |||| | || || ||||| || || |||||| || Sbjct 63761 ATGTCTACGGTGACGAGTTCGAAGCGTTGTATGAGAAATACGAGTCTGAGGGCAAGGGTC 63820 Query 111010 GCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTG 111069 |||| || ||| ||| | ||||||| | |||||||| | ||| ||| || | Sbjct 63821 GCAAGAGCATCAAAGCCCAAAAGCTTTGGTACTCTATCCTTGAGGCTCAAACTGAGACCG 63880 Query 111070 GAACTCCTT 111078 ||| |||| Sbjct 63881 GAAACCCTT 63889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186786736849154