Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1406 109 4e-19 >seq1406 Length=252419 Score = 109 bits (120), Expect = 4e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || | ||||||||| ||||| ||||| |||||| |||||| || | || || Sbjct 215543 CACCAAGTGCAAAGTGCTCTCCTTTTGGATGTTATAATCGCTGAGTGTACGGCCATCCTC 215484 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 |||||| || ||||| |||||||| ||||| |||||| | || | ||| || || || Sbjct 215483 CAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGGGATACCCTCCTTATCCTG 215424 Query 33660 AATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || || | |||| ||| |||||| || || || || | || || || | Sbjct 215423 GATCTT-TGACTTGACATTATCAATGGTGTCCGAAGACTCAACTTCTAATGTAATAGTCT 215365 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || || || || || |||||||||||| Sbjct 215364 TGCCCGTCAAAGTCTTAACGAAGATCTGCATA 215333 Score = 86.0 bits (94), Expect = 4e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || || ||| ||| || || ||||||||||| || || || ||| |||| || Sbjct 214803 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGATAGAGTACGTCCGTCCTCG 214744 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || ||||||||||| |||||||| ||||||||| | || | || || ||||| Sbjct 214743 AGCTGCTTTCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGG 214684 Query 33661 ATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTA 33720 || || || | || | ||||||| || ||||| |||| ||||| || ||| Sbjct 214683 ATCTTGGACTTGACGTTATCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTA 214624 Query 33721 CCTGT 33725 || || Sbjct 214623 CCGGT 214619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328697133578880