Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq1406 91.5 1e-13
seq908 87.8 2e-12
>seq1406
Length=252419
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/211 (70%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | || || || || | |||||||| ||||||| |||| || || |
Sbjct 215106 ATGCAAATATTCGTCAAGACCCTCACCGGAAAGACGATCACTCTCGAGGTTGAGTCTTCA 215165
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
||||||||||| | || || || ||| ||||| |||||||| || || || ||
Sbjct 215166 GATACTATCGACAATGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTGACCAA 215225
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352
|| ||||||||| || ||||| ||| | || |||| ||| |||| ||| ||||
Sbjct 215226 CAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTC--CGACTACA 215283
Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGT 25383
| || ||||| || ||||| ||||||| ||
Sbjct 215284 ACATCCAAAAGGAGTCCACACTTCATTTGGT 215314
>seq908
Length=77775
Score = 87.8 bits (96), Expect = 2e-12
Identities = 129/182 (71%), Gaps = 2/182 (1%)
Strand=Plus/Minus
Query 110712 GCTCGATGATATTATTGTTCACGATGACGTCGGCGGCAGCGAAAAAGGCGAGAACGTGTT 110771
|||||| || || | ||| || || |||| | ||||||||| || ||||| |||||
Sbjct 44867 GCTCGAGGAGGTTCTCGTTGACAATCCCGTCAGAGGCAGCGAAGAAAGCGAGGACGTGGG 44808
Query 110772 TAAGAAAGAATCGTTCCTTGTCGTTCAGTTTATTGTTCCAGTCTTCAAAGTCCTTGGACA 110831
| ||| | || || | ||||| || || ||||||||||| | | |||||||| |
Sbjct 44807 AGATGAAGTAACGCTCGTCATCGTTGAGCTTGTTGTTCCAGTCGTGGAGATCCTTGGATA 44748
Query 110832 TGTCGATCTCTTCGACCTTCCAGTGACAATCGACCGCCTTCTTGTACGATTGCCAAAGAT 110891
|| ||||||||| | ||||| || | | |||||||||||| ||||| ||||
Sbjct 44747 GATCAATCTCTTCGGCAGTCCAGAATGAAGCTTCGGCCTTCTTGTACATTTGCC--AGAT 44690
Query 110892 CT 110893
||
Sbjct 44689 CT 44688
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445084863852480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |