Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1406 91.5 1e-13 seq908 87.8 2e-12 >seq1406 Length=252419 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | |||||||| ||||||| |||| || || | Sbjct 215106 ATGCAAATATTCGTCAAGACCCTCACCGGAAAGACGATCACTCTCGAGGTTGAGTCTTCA 215165 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||||||||| | || || || ||| ||||| |||||||| || || || || Sbjct 215166 GATACTATCGACAATGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTGACCAA 215225 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 || ||||||||| || ||||| ||| | || |||| ||| |||| ||| |||| Sbjct 215226 CAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTC--CGACTACA 215283 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGT 25383 | || ||||| || ||||| ||||||| || Sbjct 215284 ACATCCAAAAGGAGTCCACACTTCATTTGGT 215314 >seq908 Length=77775 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 110712 GCTCGATGATATTATTGTTCACGATGACGTCGGCGGCAGCGAAAAAGGCGAGAACGTGTT 110771 |||||| || || | ||| || || |||| | ||||||||| || ||||| ||||| Sbjct 44867 GCTCGAGGAGGTTCTCGTTGACAATCCCGTCAGAGGCAGCGAAGAAAGCGAGGACGTGGG 44808 Query 110772 TAAGAAAGAATCGTTCCTTGTCGTTCAGTTTATTGTTCCAGTCTTCAAAGTCCTTGGACA 110831 | ||| | || || | ||||| || || ||||||||||| | | |||||||| | Sbjct 44807 AGATGAAGTAACGCTCGTCATCGTTGAGCTTGTTGTTCCAGTCGTGGAGATCCTTGGATA 44748 Query 110832 TGTCGATCTCTTCGACCTTCCAGTGACAATCGACCGCCTTCTTGTACGATTGCCAAAGAT 110891 || ||||||||| | ||||| || | | |||||||||||| ||||| |||| Sbjct 44747 GATCAATCTCTTCGGCAGTCCAGAATGAAGCTTCGGCCTTCTTGTACATTTGCC--AGAT 44690 Query 110892 CT 110893 || Sbjct 44689 CT 44688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445084863852480